miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1644 3' -56.3 NC_001347.2 + 29933 0.66 0.959694
Target:  5'- -cCUCGUGGAGGcAccgcgacagcUACCGa-GGCGCUg -3'
miRNA:   3'- uaGAGCGCCUUC-U----------AUGGCagCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 163304 0.66 0.956106
Target:  5'- cGUCggUCGCGGcg---ACuCGUCGcGCGCCa -3'
miRNA:   3'- -UAG--AGCGCCuucuaUG-GCAGC-CGCGG- -5'
1644 3' -56.3 NC_001347.2 + 71695 0.66 0.948292
Target:  5'- -cUUCGCGGggGAcAUCaUCGcCGCCg -3'
miRNA:   3'- uaGAGCGCCuuCUaUGGcAGCcGCGG- -5'
1644 3' -56.3 NC_001347.2 + 157989 0.66 0.948292
Target:  5'- ---gCGCGGAGGAgGCuCGaCGGCGgCa -3'
miRNA:   3'- uagaGCGCCUUCUaUG-GCaGCCGCgG- -5'
1644 3' -56.3 NC_001347.2 + 96188 0.66 0.94406
Target:  5'- -cCUCGggcaCGGGcguGGcgGCCGUaGGCGCCu -3'
miRNA:   3'- uaGAGC----GCCU---UCuaUGGCAgCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 34680 0.66 0.939608
Target:  5'- -aCUCGCGGAcucGGUGCCc-CGGCcCCu -3'
miRNA:   3'- uaGAGCGCCUu--CUAUGGcaGCCGcGG- -5'
1644 3' -56.3 NC_001347.2 + 7102 0.66 0.939608
Target:  5'- --gUCGCGGGAGGcACU-UCGGCGUUc -3'
miRNA:   3'- uagAGCGCCUUCUaUGGcAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 142989 0.67 0.934935
Target:  5'- ----gGCGGAGGA-GCCGgCGGCGgCg -3'
miRNA:   3'- uagagCGCCUUCUaUGGCaGCCGCgG- -5'
1644 3' -56.3 NC_001347.2 + 208053 0.67 0.930038
Target:  5'- --gUCGCGGcgu---UCGUUGGCGCCg -3'
miRNA:   3'- uagAGCGCCuucuauGGCAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 138689 0.67 0.930038
Target:  5'- uUUUCGCGGGcGGGUG-CGUCGGCuaGCg -3'
miRNA:   3'- uAGAGCGCCU-UCUAUgGCAGCCG--CGg -5'
1644 3' -56.3 NC_001347.2 + 38215 0.67 0.919573
Target:  5'- --aUCGCuGucGAacccaccaucACCGUCGGCGCCg -3'
miRNA:   3'- uagAGCGcCuuCUa---------UGGCAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 75116 0.67 0.915699
Target:  5'- aAUgUCGCGGAAGGUaguguacaugugcACCGUcuccucgaaagaaagCaGCGCCa -3'
miRNA:   3'- -UAgAGCGCCUUCUA-------------UGGCA---------------GcCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 142388 0.67 0.914005
Target:  5'- ---cCGgGGggGAggugcacgACCuGUCGGCGCUc -3'
miRNA:   3'- uagaGCgCCuuCUa-------UGG-CAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 188756 0.67 0.914005
Target:  5'- -gCUgGUGGAcaucacGGAUACCGagaCGaGCGCCa -3'
miRNA:   3'- uaGAgCGCCU------UCUAUGGCa--GC-CGCGG- -5'
1644 3' -56.3 NC_001347.2 + 67479 0.67 0.914005
Target:  5'- cUC-CGCGcucaauggguaGAAGuaacgcACCGUCGGUGCCg -3'
miRNA:   3'- uAGaGCGC-----------CUUCua----UGGCAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 126015 0.68 0.889534
Target:  5'- -aCUCGCGGcGGGUGgcgcCCGUCuuCGCCg -3'
miRNA:   3'- uaGAGCGCCuUCUAU----GGCAGccGCGG- -5'
1644 3' -56.3 NC_001347.2 + 153199 0.69 0.861679
Target:  5'- -gCUCGCGGAAGAUGUCGUgcaGGuCGUg -3'
miRNA:   3'- uaGAGCGCCUUCUAUGGCAg--CC-GCGg -5'
1644 3' -56.3 NC_001347.2 + 191812 0.69 0.861679
Target:  5'- -gUUgGCGaGGGAUACCGUCGuGCGaCCu -3'
miRNA:   3'- uaGAgCGCcUUCUAUGGCAGC-CGC-GG- -5'
1644 3' -56.3 NC_001347.2 + 147875 0.69 0.84657
Target:  5'- ---cCGCGGGAaagGCCGUUGGCGUa -3'
miRNA:   3'- uagaGCGCCUUcuaUGGCAGCCGCGg -5'
1644 3' -56.3 NC_001347.2 + 207112 0.7 0.814218
Target:  5'- --gUCGCGGAcAGuuccUCGUCGGCGCUu -3'
miRNA:   3'- uagAGCGCCU-UCuau-GGCAGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.