miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1644 3' -56.3 NC_001347.2 + 185023 0.71 0.779394
Target:  5'- gAUCUCGUGGggGuccaguucgGCCGgCGcGCGCUu -3'
miRNA:   3'- -UAGAGCGCCuuCua-------UGGCaGC-CGCGG- -5'
1644 3' -56.3 NC_001347.2 + 134339 0.71 0.773988
Target:  5'- ---cCGCGGAcucgccucggccaggGGGUACCGaggCGGUGCCc -3'
miRNA:   3'- uagaGCGCCU---------------UCUAUGGCa--GCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 161646 0.71 0.751953
Target:  5'- uGUCgaccCGCGGcguGGAcgcGCCGUUGGCGUCg -3'
miRNA:   3'- -UAGa---GCGCCu--UCUa--UGGCAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 192179 0.71 0.733151
Target:  5'- cGUCUC-CGGAuGAgcgGCCG-CGGCGCg -3'
miRNA:   3'- -UAGAGcGCCUuCUa--UGGCaGCCGCGg -5'
1644 3' -56.3 NC_001347.2 + 79051 0.72 0.723623
Target:  5'- ---cCGCGaGAAG--GCgCGUCGGCGCCa -3'
miRNA:   3'- uagaGCGC-CUUCuaUG-GCAGCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 159550 0.72 0.692679
Target:  5'- ---aCGCGGuugaAAGGUACCGgcgguguuggagCGGCGCCa -3'
miRNA:   3'- uagaGCGCC----UUCUAUGGCa-----------GCCGCGG- -5'
1644 3' -56.3 NC_001347.2 + 128978 1.1 0.003632
Target:  5'- cAUCUCGCGGAAGAUACCGUCGGCGCCg -3'
miRNA:   3'- -UAGAGCGCCUUCUAUGGCAGCCGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.