miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1644 5' -59.5 NC_001347.2 + 51552 0.66 0.872691
Target:  5'- aCGUCucaagaauGCCGGCCCcGCGgggucUCCUuCGCGCa -3'
miRNA:   3'- aGUAG--------UGGCUGGGaCGC-----AGGG-GCGUG- -5'
1644 5' -59.5 NC_001347.2 + 196611 0.66 0.872691
Target:  5'- gCcgUGCUGGCCCUGCGUaucauucggcUgCUGCGCg -3'
miRNA:   3'- aGuaGUGGCUGGGACGCA----------GgGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 197148 0.66 0.865659
Target:  5'- gUCGUCGCCGcCCCgGgG-CCCUcgguGCGCu -3'
miRNA:   3'- -AGUAGUGGCuGGGaCgCaGGGG----CGUG- -5'
1644 5' -59.5 NC_001347.2 + 229472 0.66 0.865659
Target:  5'- cUCAaCACUcccucgagGACCCaccacGCGgCCCCGCACc -3'
miRNA:   3'- -AGUaGUGG--------CUGGGa----CGCaGGGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 156888 0.66 0.858437
Target:  5'- cCAUCACCGucAUCC-GcCGUCUCCGC-Cg -3'
miRNA:   3'- aGUAGUGGC--UGGGaC-GCAGGGGCGuG- -5'
1644 5' -59.5 NC_001347.2 + 31117 0.66 0.854015
Target:  5'- cCAUUGCCGGCCg-GCGUCCaggcugcccugguugCCGCuGCg -3'
miRNA:   3'- aGUAGUGGCUGGgaCGCAGG---------------GGCG-UG- -5'
1644 5' -59.5 NC_001347.2 + 116879 0.66 0.85103
Target:  5'- cUCuUCGCCG-CCCgcGCGccCCCCGgGCa -3'
miRNA:   3'- -AGuAGUGGCuGGGa-CGCa-GGGGCgUG- -5'
1644 5' -59.5 NC_001347.2 + 214333 0.66 0.85103
Target:  5'- aUCGUUGCCGuCCCaGCGaaaCCaCCGUGCg -3'
miRNA:   3'- -AGUAGUGGCuGGGaCGCa--GG-GGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 1626 0.66 0.85103
Target:  5'- ----aACCGGCUggGCGUgggcaCCCCGCGCg -3'
miRNA:   3'- aguagUGGCUGGgaCGCA-----GGGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 67365 0.66 0.843445
Target:  5'- cCGUCGCCgccgccucgGACuCCUGCaccGUCucgCCCGCGCu -3'
miRNA:   3'- aGUAGUGG---------CUG-GGACG---CAG---GGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 24682 0.66 0.843445
Target:  5'- -uGUCACgUGugCCUGCcaggagCCCCGCGa -3'
miRNA:   3'- agUAGUG-GCugGGACGca----GGGGCGUg -5'
1644 5' -59.5 NC_001347.2 + 110822 0.66 0.843445
Target:  5'- ---cCGCCGACCagcGUGUUUCUGCACu -3'
miRNA:   3'- aguaGUGGCUGGga-CGCAGGGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 8609 0.66 0.835686
Target:  5'- cCGUCACgcaGGCgCUgGCGUUCCCGUAg -3'
miRNA:   3'- aGUAGUGg--CUGgGA-CGCAGGGGCGUg -5'
1644 5' -59.5 NC_001347.2 + 1841 0.66 0.835686
Target:  5'- gUCggCGCCGcACCCcGCGUCgCUGCu- -3'
miRNA:   3'- -AGuaGUGGC-UGGGaCGCAGgGGCGug -5'
1644 5' -59.5 NC_001347.2 + 225409 0.67 0.819673
Target:  5'- aCGUCuuuCCGcuuACCCaacGCGUCagCCCGCGCu -3'
miRNA:   3'- aGUAGu--GGC---UGGGa--CGCAG--GGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 38647 0.67 0.794519
Target:  5'- -aGUCGCCuGCCCgGCGUCUgCaGCGCc -3'
miRNA:   3'- agUAGUGGcUGGGaCGCAGGgG-CGUG- -5'
1644 5' -59.5 NC_001347.2 + 39090 0.67 0.78586
Target:  5'- uUCAUCugGCUG-CgCgGCGUCaCCCGCGCg -3'
miRNA:   3'- -AGUAG--UGGCuGgGaCGCAG-GGGCGUG- -5'
1644 5' -59.5 NC_001347.2 + 102989 0.67 0.78586
Target:  5'- -gGUCGCCGugC-UGCGUCUgguaaCGCGCa -3'
miRNA:   3'- agUAGUGGCugGgACGCAGGg----GCGUG- -5'
1644 5' -59.5 NC_001347.2 + 47393 0.68 0.777076
Target:  5'- cUCAUCACCGuCCCg--GUCUCCGUc- -3'
miRNA:   3'- -AGUAGUGGCuGGGacgCAGGGGCGug -5'
1644 5' -59.5 NC_001347.2 + 229229 0.68 0.768175
Target:  5'- cCGUCcCCGGCCCcaacacCGU-CCCGCACa -3'
miRNA:   3'- aGUAGuGGCUGGGac----GCAgGGGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.