Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1644 | 5' | -59.5 | NC_001347.2 | + | 1626 | 0.66 | 0.85103 |
Target: 5'- ----aACCGGCUggGCGUgggcaCCCCGCGCg -3' miRNA: 3'- aguagUGGCUGGgaCGCA-----GGGGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 1841 | 0.66 | 0.835686 |
Target: 5'- gUCggCGCCGcACCCcGCGUCgCUGCu- -3' miRNA: 3'- -AGuaGUGGC-UGGGaCGCAGgGGCGug -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 8609 | 0.66 | 0.835686 |
Target: 5'- cCGUCACgcaGGCgCUgGCGUUCCCGUAg -3' miRNA: 3'- aGUAGUGg--CUGgGA-CGCAGGGGCGUg -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 16779 | 0.69 | 0.671555 |
Target: 5'- uUCG-CGCCGGCCUcaugaagguguacgUGCGUCgCCGCuACg -3' miRNA: 3'- -AGUaGUGGCUGGG--------------ACGCAGgGGCG-UG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 21537 | 0.69 | 0.693694 |
Target: 5'- cCGUCgAUCGACCgU-UGUCCCCGCAa -3' miRNA: 3'- aGUAG-UGGCUGGgAcGCAGGGGCGUg -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 24647 | 0.69 | 0.712749 |
Target: 5'- --cUCGCCGGCCUccugGCGcacaUCCCgGCGCu -3' miRNA: 3'- aguAGUGGCUGGGa---CGC----AGGGgCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 24682 | 0.66 | 0.843445 |
Target: 5'- -uGUCACgUGugCCUGCcaggagCCCCGCGa -3' miRNA: 3'- agUAGUG-GCugGGACGca----GGGGCGUg -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 28867 | 0.69 | 0.722188 |
Target: 5'- -gAUCACC-ACCCUGU-UCCCCGUgACg -3' miRNA: 3'- agUAGUGGcUGGGACGcAGGGGCG-UG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 31117 | 0.66 | 0.854015 |
Target: 5'- cCAUUGCCGGCCg-GCGUCCaggcugcccugguugCCGCuGCg -3' miRNA: 3'- aGUAGUGGCUGGgaCGCAGG---------------GGCG-UG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 38029 | 0.71 | 0.577509 |
Target: 5'- gCGggCGCCGACUC-GCGUCCCaGCGCc -3' miRNA: 3'- aGUa-GUGGCUGGGaCGCAGGGgCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 38456 | 0.73 | 0.448496 |
Target: 5'- cCGUCGCCGGCCCcgccGCGcagcccagCCaCCGCGCg -3' miRNA: 3'- aGUAGUGGCUGGGa---CGCa-------GG-GGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 38647 | 0.67 | 0.794519 |
Target: 5'- -aGUCGCCuGCCCgGCGUCUgCaGCGCc -3' miRNA: 3'- agUAGUGGcUGGGaCGCAGGgG-CGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 39090 | 0.67 | 0.78586 |
Target: 5'- uUCAUCugGCUG-CgCgGCGUCaCCCGCGCg -3' miRNA: 3'- -AGUAG--UGGCuGgGaCGCAG-GGGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 47393 | 0.68 | 0.777076 |
Target: 5'- cUCAUCACCGuCCCg--GUCUCCGUc- -3' miRNA: 3'- -AGUAGUGGCuGGGacgCAGGGGCGug -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 51552 | 0.66 | 0.872691 |
Target: 5'- aCGUCucaagaauGCCGGCCCcGCGgggucUCCUuCGCGCa -3' miRNA: 3'- aGUAG--------UGGCUGGGaCGC-----AGGG-GCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 60438 | 0.69 | 0.684093 |
Target: 5'- cCAUCuACCcACCCUGCGagacaUCCGCACc -3' miRNA: 3'- aGUAG-UGGcUGGGACGCag---GGGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 67365 | 0.66 | 0.843445 |
Target: 5'- cCGUCGCCgccgccucgGACuCCUGCaccGUCucgCCCGCGCu -3' miRNA: 3'- aGUAGUGG---------CUG-GGACG---CAG---GGGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 71708 | 0.7 | 0.616214 |
Target: 5'- aUCAUCgccGCCGACCC-GCGUgugCCCUGCc- -3' miRNA: 3'- -AGUAG---UGGCUGGGaCGCA---GGGGCGug -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 85863 | 0.7 | 0.645377 |
Target: 5'- gUCGcgCACCGGCUC-GCGUCCgUGCAUc -3' miRNA: 3'- -AGUa-GUGGCUGGGaCGCAGGgGCGUG- -5' |
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1644 | 5' | -59.5 | NC_001347.2 | + | 89652 | 0.7 | 0.642461 |
Target: 5'- gCGUCAUCGACCCgGCcugcugacgcgcucGUCUcgaCCGCACa -3' miRNA: 3'- aGUAGUGGCUGGGaCG--------------CAGG---GGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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