miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16440 3' -50.3 NC_004084.1 + 37842 1.1 0.003598
Target:  5'- uGUUUCGUCGACGGCCGAUUCGAACUGg -3'
miRNA:   3'- -CAAAGCAGCUGCCGGCUAAGCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 58126 0.77 0.409725
Target:  5'- --cUCGUCGGCGGUCGucgUCGAGCc- -3'
miRNA:   3'- caaAGCAGCUGCCGGCua-AGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 18850 0.76 0.489978
Target:  5'- cUUUCGUCGACGGucCCGGUcgagUCGAucgcGCUGg -3'
miRNA:   3'- cAAAGCAGCUGCC--GGCUA----AGCU----UGAC- -5'
16440 3' -50.3 NC_004084.1 + 55980 0.75 0.500532
Target:  5'- --cUCGUCGACGGUCGAUUCa----- -3'
miRNA:   3'- caaAGCAGCUGCCGGCUAAGcuugac -5'
16440 3' -50.3 NC_004084.1 + 12446 0.74 0.576815
Target:  5'- ---gCGUCGACGuGCCGAUcgUCGAAUUu -3'
miRNA:   3'- caaaGCAGCUGC-CGGCUA--AGCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 18015 0.74 0.587968
Target:  5'- uUUUCGUCGACGGC-GAgugUGAugUGg -3'
miRNA:   3'- cAAAGCAGCUGCCGgCUaa-GCUugAC- -5'
16440 3' -50.3 NC_004084.1 + 47358 0.73 0.64412
Target:  5'- -gUUCGUCGGCGGCCGccccUUCGuccGCg- -3'
miRNA:   3'- caAAGCAGCUGCCGGCu---AAGCu--UGac -5'
16440 3' -50.3 NC_004084.1 + 15032 0.72 0.688891
Target:  5'- ---gCGUCGACGGCCac-UCGAGgUGg -3'
miRNA:   3'- caaaGCAGCUGCCGGcuaAGCUUgAC- -5'
16440 3' -50.3 NC_004084.1 + 26014 0.72 0.688891
Target:  5'- --cUCGUCGACGGgaCCGAacgCGGACUc -3'
miRNA:   3'- caaAGCAGCUGCC--GGCUaa-GCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 30248 0.71 0.721911
Target:  5'- ---aCGUCGAacaGGCCGAggaCGGACUa -3'
miRNA:   3'- caaaGCAGCUg--CCGGCUaa-GCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 7492 0.71 0.721911
Target:  5'- aGggUCGUCGACgucgaGGCCGAUcCGcuGCUGg -3'
miRNA:   3'- -CaaAGCAGCUG-----CCGGCUAaGCu-UGAC- -5'
16440 3' -50.3 NC_004084.1 + 22841 0.71 0.721911
Target:  5'- -gUUCGUCGACGGCCucguGAUgcucgaCGAACc- -3'
miRNA:   3'- caAAGCAGCUGCCGG----CUAa-----GCUUGac -5'
16440 3' -50.3 NC_004084.1 + 53157 0.71 0.732748
Target:  5'- --gUCGUCGACgaGGCCGAU---GACUGa -3'
miRNA:   3'- caaAGCAGCUG--CCGGCUAagcUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 20123 0.71 0.754092
Target:  5'- --cUCGUCGACGGaacgucgguCgGAUUCGAuCUGg -3'
miRNA:   3'- caaAGCAGCUGCC---------GgCUAAGCUuGAC- -5'
16440 3' -50.3 NC_004084.1 + 52470 0.71 0.764576
Target:  5'- ----aGUCGAUGGCCGAggCGAAg-- -3'
miRNA:   3'- caaagCAGCUGCCGGCUaaGCUUgac -5'
16440 3' -50.3 NC_004084.1 + 51617 0.7 0.774917
Target:  5'- ---aCGUCGACGGCgCGG---GAGCUGa -3'
miRNA:   3'- caaaGCAGCUGCCG-GCUaagCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 53254 0.7 0.774917
Target:  5'- --gUCGUCGACGGCgaCGAgaUCGGGCc- -3'
miRNA:   3'- caaAGCAGCUGCCG--GCUa-AGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 36822 0.7 0.795125
Target:  5'- ---gCGUCGACGaacGCCGAU-CGAACg- -3'
miRNA:   3'- caaaGCAGCUGC---CGGCUAaGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 36715 0.69 0.824075
Target:  5'- --cUCGUCGACGGUCGc--CGAcgucaGCUGu -3'
miRNA:   3'- caaAGCAGCUGCCGGCuaaGCU-----UGAC- -5'
16440 3' -50.3 NC_004084.1 + 13128 0.69 0.833318
Target:  5'- --gUCGgacgaagacuUCGACGGCgaCGAUUCGGACg- -3'
miRNA:   3'- caaAGC----------AGCUGCCG--GCUAAGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.