Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16440 | 3' | -50.3 | NC_004084.1 | + | 3070 | 0.68 | 0.883813 |
Target: 5'- --cUCGUCGACGGgCCGcucgUCGAcguGCg- -3' miRNA: 3'- caaAGCAGCUGCC-GGCua--AGCU---UGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 3178 | 0.67 | 0.918588 |
Target: 5'- --gUCGUCGACGG-CGAggacgUGAACg- -3' miRNA: 3'- caaAGCAGCUGCCgGCUaa---GCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 7492 | 0.71 | 0.721911 |
Target: 5'- aGggUCGUCGACgucgaGGCCGAUcCGcuGCUGg -3' miRNA: 3'- -CaaAGCAGCUG-----CCGGCUAaGCu-UGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 9406 | 0.67 | 0.918588 |
Target: 5'- ---aCGUCGACGcgcuuGCCGAUgaCGAGCa- -3' miRNA: 3'- caaaGCAGCUGC-----CGGCUAa-GCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 10531 | 0.67 | 0.905523 |
Target: 5'- ---cCGUCGACGuuGCCGAgccagCGGACg- -3' miRNA: 3'- caaaGCAGCUGC--CGGCUaa---GCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 12028 | 0.66 | 0.946211 |
Target: 5'- --gUCGcCGAUcGUCGAUUCGAcCUGa -3' miRNA: 3'- caaAGCaGCUGcCGGCUAAGCUuGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 12446 | 0.74 | 0.576815 |
Target: 5'- ---gCGUCGACGuGCCGAUcgUCGAAUUu -3' miRNA: 3'- caaaGCAGCUGC-CGGCUA--AGCUUGAc -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 12501 | 0.69 | 0.842339 |
Target: 5'- ----gGUCuacACGGCCGAgaugcUCGAGCUGg -3' miRNA: 3'- caaagCAGc--UGCCGGCUa----AGCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 13128 | 0.69 | 0.833318 |
Target: 5'- --gUCGgacgaagacuUCGACGGCgaCGAUUCGGACg- -3' miRNA: 3'- caaAGC----------AGCUGCCG--GCUAAGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 15032 | 0.72 | 0.688891 |
Target: 5'- ---gCGUCGACGGCCac-UCGAGgUGg -3' miRNA: 3'- caaaGCAGCUGCCGGcuaAGCUUgAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 16407 | 0.67 | 0.912199 |
Target: 5'- --cUCG-CGACGGCCac-UCGAGCa- -3' miRNA: 3'- caaAGCaGCUGCCGGcuaAGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 17563 | 0.66 | 0.950878 |
Target: 5'- --gUCGaucUCGACGGCCaGUUCGGGg-- -3' miRNA: 3'- caaAGC---AGCUGCCGGcUAAGCUUgac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 17981 | 0.69 | 0.833318 |
Target: 5'- --aUCGUCGGCGcGCUG--UCGAGCg- -3' miRNA: 3'- caaAGCAGCUGC-CGGCuaAGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 18015 | 0.74 | 0.587968 |
Target: 5'- uUUUCGUCGACGGC-GAgugUGAugUGg -3' miRNA: 3'- cAAAGCAGCUGCCGgCUaa-GCUugAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 18850 | 0.76 | 0.489978 |
Target: 5'- cUUUCGUCGACGGucCCGGUcgagUCGAucgcGCUGg -3' miRNA: 3'- cAAAGCAGCUGCC--GGCUA----AGCU----UGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 19017 | 0.66 | 0.950878 |
Target: 5'- ---aCGaCGAC-GCCGAgcUCGAACUGg -3' miRNA: 3'- caaaGCaGCUGcCGGCUa-AGCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 19677 | 0.67 | 0.912199 |
Target: 5'- -gUUCGUCGACGGCauCGcgUucacCGAGCa- -3' miRNA: 3'- caAAGCAGCUGCCG--GCuaA----GCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 20123 | 0.71 | 0.754092 |
Target: 5'- --cUCGUCGACGGaacgucgguCgGAUUCGAuCUGg -3' miRNA: 3'- caaAGCAGCUGCC---------GgCUAAGCUuGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 21043 | 0.69 | 0.850262 |
Target: 5'- -gUUCGUCGaagucagGCGGCCaccgcagugcUUCGAGCUGg -3' miRNA: 3'- caAAGCAGC-------UGCCGGcu--------AAGCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 22841 | 0.71 | 0.721911 |
Target: 5'- -gUUCGUCGACGGCCucguGAUgcucgaCGAACc- -3' miRNA: 3'- caAAGCAGCUGCCGG----CUAa-----GCUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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