miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16440 3' -50.3 NC_004084.1 + 26014 0.72 0.688891
Target:  5'- --cUCGUCGACGGgaCCGAacgCGGACUc -3'
miRNA:   3'- caaAGCAGCUGCC--GGCUaa-GCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 28090 0.67 0.918588
Target:  5'- --cUCGcCGACGGUcaaCGGUUCGGGgUGc -3'
miRNA:   3'- caaAGCaGCUGCCG---GCUAAGCUUgAC- -5'
16440 3' -50.3 NC_004084.1 + 30248 0.71 0.721911
Target:  5'- ---aCGUCGAacaGGCCGAggaCGGACUa -3'
miRNA:   3'- caaaGCAGCUg--CCGGCUaa-GCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 36715 0.69 0.824075
Target:  5'- --cUCGUCGACGGUCGc--CGAcgucaGCUGu -3'
miRNA:   3'- caaAGCAGCUGCCGGCuaaGCU-----UGAC- -5'
16440 3' -50.3 NC_004084.1 + 36822 0.7 0.795125
Target:  5'- ---gCGUCGACGaacGCCGAU-CGAACg- -3'
miRNA:   3'- caaaGCAGCUGC---CGGCUAaGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 37577 0.68 0.87603
Target:  5'- --cUCGUCGACGaGCCGAggcacucUCGGGgaGc -3'
miRNA:   3'- caaAGCAGCUGC-CGGCUa------AGCUUgaC- -5'
16440 3' -50.3 NC_004084.1 + 37842 1.1 0.003598
Target:  5'- uGUUUCGUCGACGGCCGAUUCGAACUGg -3'
miRNA:   3'- -CAAAGCAGCUGCCGGCUAAGCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 39842 0.66 0.959382
Target:  5'- --cUCGaguccaUCGGCGGCCGcggcgccgUCGAGCa- -3'
miRNA:   3'- caaAGC------AGCUGCCGGCua------AGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 40681 0.67 0.912199
Target:  5'- aGUUUCG-CGGa-GCCGAggaCGAGCUGa -3'
miRNA:   3'- -CAAAGCaGCUgcCGGCUaa-GCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 45640 0.66 0.955267
Target:  5'- --gUCGUCGACGGCguc-UCGGAUg- -3'
miRNA:   3'- caaAGCAGCUGCCGgcuaAGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 46946 0.66 0.959382
Target:  5'- --gUCGUgccCGAgCGGCUGcUUCGAACUc -3'
miRNA:   3'- caaAGCA---GCU-GCCGGCuAAGCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 47358 0.73 0.64412
Target:  5'- -gUUCGUCGGCGGCCGccccUUCGuccGCg- -3'
miRNA:   3'- caAAGCAGCUGCCGGCu---AAGCu--UGac -5'
16440 3' -50.3 NC_004084.1 + 48561 0.68 0.883813
Target:  5'- --cUCGUCG-CGGUCGAggCGAAUc- -3'
miRNA:   3'- caaAGCAGCuGCCGGCUaaGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 51617 0.7 0.774917
Target:  5'- ---aCGUCGACGGCgCGG---GAGCUGa -3'
miRNA:   3'- caaaGCAGCUGCCG-GCUaagCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 52470 0.71 0.764576
Target:  5'- ----aGUCGAUGGCCGAggCGAAg-- -3'
miRNA:   3'- caaagCAGCUGCCGGCUaaGCUUgac -5'
16440 3' -50.3 NC_004084.1 + 53157 0.71 0.732748
Target:  5'- --gUCGUCGACgaGGCCGAU---GACUGa -3'
miRNA:   3'- caaAGCAGCUG--CCGGCUAagcUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 53254 0.7 0.774917
Target:  5'- --gUCGUCGACGGCgaCGAgaUCGGGCc- -3'
miRNA:   3'- caaAGCAGCUGCCG--GCUa-AGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 55980 0.75 0.500532
Target:  5'- --cUCGUCGACGGUCGAUUCa----- -3'
miRNA:   3'- caaAGCAGCUGCCGGCUAAGcuugac -5'
16440 3' -50.3 NC_004084.1 + 57408 0.66 0.959382
Target:  5'- ---gCGUCGACGucGCCGg--CGAGCUc -3'
miRNA:   3'- caaaGCAGCUGC--CGGCuaaGCUUGAc -5'
16440 3' -50.3 NC_004084.1 + 57647 0.67 0.930501
Target:  5'- --gUCGccUCGACGaGCCGAU-CGGcCUGg -3'
miRNA:   3'- caaAGC--AGCUGC-CGGCUAaGCUuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.