Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16440 | 3' | -50.3 | NC_004084.1 | + | 58211 | 0.66 | 0.955267 |
Target: 5'- ---cCGcCGAUGGCCGug-CGGGCUc -3' miRNA: 3'- caaaGCaGCUGCCGGCuaaGCUUGAc -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 58126 | 0.77 | 0.409725 |
Target: 5'- --cUCGUCGGCGGUCGucgUCGAGCc- -3' miRNA: 3'- caaAGCAGCUGCCGGCua-AGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 57647 | 0.67 | 0.930501 |
Target: 5'- --gUCGccUCGACGaGCCGAU-CGGcCUGg -3' miRNA: 3'- caaAGC--AGCUGC-CGGCUAaGCUuGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 57408 | 0.66 | 0.959382 |
Target: 5'- ---gCGUCGACGucGCCGg--CGAGCUc -3' miRNA: 3'- caaaGCAGCUGC--CGGCuaaGCUUGAc -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 55980 | 0.75 | 0.500532 |
Target: 5'- --cUCGUCGACGGUCGAUUCa----- -3' miRNA: 3'- caaAGCAGCUGCCGGCUAAGcuugac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 53254 | 0.7 | 0.774917 |
Target: 5'- --gUCGUCGACGGCgaCGAgaUCGGGCc- -3' miRNA: 3'- caaAGCAGCUGCCG--GCUa-AGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 53157 | 0.71 | 0.732748 |
Target: 5'- --gUCGUCGACgaGGCCGAU---GACUGa -3' miRNA: 3'- caaAGCAGCUG--CCGGCUAagcUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 52470 | 0.71 | 0.764576 |
Target: 5'- ----aGUCGAUGGCCGAggCGAAg-- -3' miRNA: 3'- caaagCAGCUGCCGGCUaaGCUUgac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 51617 | 0.7 | 0.774917 |
Target: 5'- ---aCGUCGACGGCgCGG---GAGCUGa -3' miRNA: 3'- caaaGCAGCUGCCG-GCUaagCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 48561 | 0.68 | 0.883813 |
Target: 5'- --cUCGUCG-CGGUCGAggCGAAUc- -3' miRNA: 3'- caaAGCAGCuGCCGGCUaaGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 47358 | 0.73 | 0.64412 |
Target: 5'- -gUUCGUCGGCGGCCGccccUUCGuccGCg- -3' miRNA: 3'- caAAGCAGCUGCCGGCu---AAGCu--UGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 46946 | 0.66 | 0.959382 |
Target: 5'- --gUCGUgccCGAgCGGCUGcUUCGAACUc -3' miRNA: 3'- caaAGCA---GCU-GCCGGCuAAGCUUGAc -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 45640 | 0.66 | 0.955267 |
Target: 5'- --gUCGUCGACGGCguc-UCGGAUg- -3' miRNA: 3'- caaAGCAGCUGCCGgcuaAGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 40681 | 0.67 | 0.912199 |
Target: 5'- aGUUUCG-CGGa-GCCGAggaCGAGCUGa -3' miRNA: 3'- -CAAAGCaGCUgcCGGCUaa-GCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 39842 | 0.66 | 0.959382 |
Target: 5'- --cUCGaguccaUCGGCGGCCGcggcgccgUCGAGCa- -3' miRNA: 3'- caaAGC------AGCUGCCGGCua------AGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 37842 | 1.1 | 0.003598 |
Target: 5'- uGUUUCGUCGACGGCCGAUUCGAACUGg -3' miRNA: 3'- -CAAAGCAGCUGCCGGCUAAGCUUGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 37577 | 0.68 | 0.87603 |
Target: 5'- --cUCGUCGACGaGCCGAggcacucUCGGGgaGc -3' miRNA: 3'- caaAGCAGCUGC-CGGCUa------AGCUUgaC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 36822 | 0.7 | 0.795125 |
Target: 5'- ---gCGUCGACGaacGCCGAU-CGAACg- -3' miRNA: 3'- caaaGCAGCUGC---CGGCUAaGCUUGac -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 36715 | 0.69 | 0.824075 |
Target: 5'- --cUCGUCGACGGUCGc--CGAcgucaGCUGu -3' miRNA: 3'- caaAGCAGCUGCCGGCuaaGCU-----UGAC- -5' |
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16440 | 3' | -50.3 | NC_004084.1 | + | 30248 | 0.71 | 0.721911 |
Target: 5'- ---aCGUCGAacaGGCCGAggaCGGACUa -3' miRNA: 3'- caaaGCAGCUg--CCGGCUaa-GCUUGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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