miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16440 3' -50.3 NC_004084.1 + 19017 0.66 0.950878
Target:  5'- ---aCGaCGAC-GCCGAgcUCGAACUGg -3'
miRNA:   3'- caaaGCaGCUGcCGGCUa-AGCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 37577 0.68 0.87603
Target:  5'- --cUCGUCGACGaGCCGAggcacucUCGGGgaGc -3'
miRNA:   3'- caaAGCAGCUGC-CGGCUa------AGCUUgaC- -5'
16440 3' -50.3 NC_004084.1 + 3070 0.68 0.883813
Target:  5'- --cUCGUCGACGGgCCGcucgUCGAcguGCg- -3'
miRNA:   3'- caaAGCAGCUGCC-GGCua--AGCU---UGac -5'
16440 3' -50.3 NC_004084.1 + 48561 0.68 0.883813
Target:  5'- --cUCGUCG-CGGUCGAggCGAAUc- -3'
miRNA:   3'- caaAGCAGCuGCCGGCUaaGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 16407 0.67 0.912199
Target:  5'- --cUCG-CGACGGCCac-UCGAGCa- -3'
miRNA:   3'- caaAGCaGCUGCCGGcuaAGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 19677 0.67 0.912199
Target:  5'- -gUUCGUCGACGGCauCGcgUucacCGAGCa- -3'
miRNA:   3'- caAAGCAGCUGCCG--GCuaA----GCUUGac -5'
16440 3' -50.3 NC_004084.1 + 3178 0.67 0.918588
Target:  5'- --gUCGUCGACGG-CGAggacgUGAACg- -3'
miRNA:   3'- caaAGCAGCUGCCgGCUaa---GCUUGac -5'
16440 3' -50.3 NC_004084.1 + 28090 0.67 0.918588
Target:  5'- --cUCGcCGACGGUcaaCGGUUCGGGgUGc -3'
miRNA:   3'- caaAGCaGCUGCCG---GCUAAGCUUgAC- -5'
16440 3' -50.3 NC_004084.1 + 12028 0.66 0.946211
Target:  5'- --gUCGcCGAUcGUCGAUUCGAcCUGa -3'
miRNA:   3'- caaAGCaGCUGcCGGCUAAGCUuGAC- -5'
16440 3' -50.3 NC_004084.1 + 12501 0.69 0.842339
Target:  5'- ----gGUCuacACGGCCGAgaugcUCGAGCUGg -3'
miRNA:   3'- caaagCAGc--UGCCGGCUa----AGCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 17981 0.69 0.833318
Target:  5'- --aUCGUCGGCGcGCUG--UCGAGCg- -3'
miRNA:   3'- caaAGCAGCUGC-CGGCuaAGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 13128 0.69 0.833318
Target:  5'- --gUCGgacgaagacuUCGACGGCgaCGAUUCGGACg- -3'
miRNA:   3'- caaAGC----------AGCUGCCG--GCUAAGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 47358 0.73 0.64412
Target:  5'- -gUUCGUCGGCGGCCGccccUUCGuccGCg- -3'
miRNA:   3'- caAAGCAGCUGCCGGCu---AAGCu--UGac -5'
16440 3' -50.3 NC_004084.1 + 22841 0.71 0.721911
Target:  5'- -gUUCGUCGACGGCCucguGAUgcucgaCGAACc- -3'
miRNA:   3'- caAAGCAGCUGCCGG----CUAa-----GCUUGac -5'
16440 3' -50.3 NC_004084.1 + 53157 0.71 0.732748
Target:  5'- --gUCGUCGACgaGGCCGAU---GACUGa -3'
miRNA:   3'- caaAGCAGCUG--CCGGCUAagcUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 20123 0.71 0.754092
Target:  5'- --cUCGUCGACGGaacgucgguCgGAUUCGAuCUGg -3'
miRNA:   3'- caaAGCAGCUGCC---------GgCUAAGCUuGAC- -5'
16440 3' -50.3 NC_004084.1 + 52470 0.71 0.764576
Target:  5'- ----aGUCGAUGGCCGAggCGAAg-- -3'
miRNA:   3'- caaagCAGCUGCCGGCUaaGCUUgac -5'
16440 3' -50.3 NC_004084.1 + 51617 0.7 0.774917
Target:  5'- ---aCGUCGACGGCgCGG---GAGCUGa -3'
miRNA:   3'- caaaGCAGCUGCCG-GCUaagCUUGAC- -5'
16440 3' -50.3 NC_004084.1 + 53254 0.7 0.774917
Target:  5'- --gUCGUCGACGGCgaCGAgaUCGGGCc- -3'
miRNA:   3'- caaAGCAGCUGCCG--GCUa-AGCUUGac -5'
16440 3' -50.3 NC_004084.1 + 36822 0.7 0.795125
Target:  5'- ---gCGUCGACGaacGCCGAU-CGAACg- -3'
miRNA:   3'- caaaGCAGCUGC---CGGCUAaGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.