miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16440 5' -53.2 NC_004084.1 + 29038 0.66 0.845158
Target:  5'- aUCAccUUCCaggagggacgcggGAUccCGGGCGUCGACcAGCGc -3'
miRNA:   3'- gAGU--AAGG-------------CUA--GCCCGUAGCUG-UCGU- -5'
16440 5' -53.2 NC_004084.1 + 49513 0.66 0.828153
Target:  5'- aCUCGaUCCGGUCGG-CAUCcACGGaCGa -3'
miRNA:   3'- -GAGUaAGGCUAGCCcGUAGcUGUC-GU- -5'
16440 5' -53.2 NC_004084.1 + 13312 0.66 0.828153
Target:  5'- gCUCGUUgCaGAUCGGGC----ACAGCAg -3'
miRNA:   3'- -GAGUAAgG-CUAGCCCGuagcUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 21193 0.66 0.818893
Target:  5'- aUCA--CCGAUCGGaucauccaguaCAUCGGCGGCGa -3'
miRNA:   3'- gAGUaaGGCUAGCCc----------GUAGCUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 15750 0.67 0.789952
Target:  5'- cCUCGcgCCGAguauUCaGGCucUCGACGGCGa -3'
miRNA:   3'- -GAGUaaGGCU----AGcCCGu-AGCUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 18352 0.67 0.779954
Target:  5'- -cCAUcCCGAcguUCGcGGgGUCGACGGCu -3'
miRNA:   3'- gaGUAaGGCU---AGC-CCgUAGCUGUCGu -5'
16440 5' -53.2 NC_004084.1 + 7110 0.67 0.7595
Target:  5'- uCUCcgaAUUCCGAUCcuGGGUuugGUCGACGGa- -3'
miRNA:   3'- -GAG---UAAGGCUAG--CCCG---UAGCUGUCgu -5'
16440 5' -53.2 NC_004084.1 + 39047 0.67 0.7595
Target:  5'- gUCGaUgCGAUCGGGacguuGUCGAuCAGCAg -3'
miRNA:   3'- gAGUaAgGCUAGCCCg----UAGCU-GUCGU- -5'
16440 5' -53.2 NC_004084.1 + 16564 0.68 0.748016
Target:  5'- uCUCGggCCGAUCGGuGCcgcuuuccuacucGUCGgaGCGGCGa -3'
miRNA:   3'- -GAGUaaGGCUAGCC-CG-------------UAGC--UGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 54889 0.68 0.738512
Target:  5'- aCUCGaggCGAUCGGGCAUCGuCAcCAc -3'
miRNA:   3'- -GAGUaagGCUAGCCCGUAGCuGUcGU- -5'
16440 5' -53.2 NC_004084.1 + 21761 0.68 0.738512
Target:  5'- --gGUUCCa--CGGGgAUCGGCGGCAu -3'
miRNA:   3'- gagUAAGGcuaGCCCgUAGCUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 53236 0.7 0.628868
Target:  5'- gUCAUcuaCGAgCGGGCGgucgUCGACGGCGa -3'
miRNA:   3'- gAGUAag-GCUaGCCCGU----AGCUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 17430 0.71 0.52996
Target:  5'- uCUCGUUCCGGaacucgUCGGGUucguccgggaucGUCGACGGgAu -3'
miRNA:   3'- -GAGUAAGGCU------AGCCCG------------UAGCUGUCgU- -5'
16440 5' -53.2 NC_004084.1 + 38350 0.74 0.399178
Target:  5'- uUCGcUCCGGcgUCGucGGUAUCGACAGCAu -3'
miRNA:   3'- gAGUaAGGCU--AGC--CCGUAGCUGUCGU- -5'
16440 5' -53.2 NC_004084.1 + 37877 1.09 0.001832
Target:  5'- cCUCAUUCCGAUCGGGCAUCGACAGCAc -3'
miRNA:   3'- -GAGUAAGGCUAGCCCGUAGCUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.