miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16443 3' -48.7 NC_004084.1 + 54056 0.66 0.981739
Target:  5'- cGguUGGAcGCGCGAcgaggAgaCGGGCGAGCc -3'
miRNA:   3'- -CguAUUU-CGCGCU-----UgaGCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 54174 0.66 0.981739
Target:  5'- ------cGCG-GAACUCGAG-GAACGa -3'
miRNA:   3'- cguauuuCGCgCUUGAGCUCgCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 50247 0.66 0.981739
Target:  5'- --cUGAGGCGUc-GCUgGAGCGGGCu -3'
miRNA:   3'- cguAUUUCGCGcuUGAgCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 13381 0.66 0.981739
Target:  5'- cGCAguccGAGCGCcAGUUCGAGCuGAACc -3'
miRNA:   3'- -CGUau--UUCGCGcUUGAGCUCG-CUUGc -5'
16443 3' -48.7 NC_004084.1 + 36868 0.66 0.981739
Target:  5'- -----cAGCGUGGACUCaAGCcGACGg -3'
miRNA:   3'- cguauuUCGCGCUUGAGcUCGcUUGC- -5'
16443 3' -48.7 NC_004084.1 + 15258 0.66 0.981739
Target:  5'- cCGUGAA-CGCGAACUC-AGCGuACu -3'
miRNA:   3'- cGUAUUUcGCGCUUGAGcUCGCuUGc -5'
16443 3' -48.7 NC_004084.1 + 28673 0.66 0.981511
Target:  5'- ------cGCaGCGAGCUCaacgucgagcacuGGGCGGACGg -3'
miRNA:   3'- cguauuuCG-CGCUUGAG-------------CUCGCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 56838 0.66 0.979364
Target:  5'- -----cAGCGCGGGcCUCGAGCcucgggccaGAGCa -3'
miRNA:   3'- cguauuUCGCGCUU-GAGCUCG---------CUUGc -5'
16443 3' -48.7 NC_004084.1 + 4018 0.66 0.976768
Target:  5'- aCAUGAGGCGUcGACUgGAacgGCGAucGCGu -3'
miRNA:   3'- cGUAUUUCGCGcUUGAgCU---CGCU--UGC- -5'
16443 3' -48.7 NC_004084.1 + 10444 0.66 0.976768
Target:  5'- uGCAUcc--CGCaGAaguACUCGAGCGGACc -3'
miRNA:   3'- -CGUAuuucGCG-CU---UGAGCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 18534 0.66 0.973939
Target:  5'- -gGUGAccAGUGCcgcaucGAACUCGGGUGGGCc -3'
miRNA:   3'- cgUAUU--UCGCG------CUUGAGCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 265 0.66 0.973939
Target:  5'- aGCuc-GAGCGUGcAGCUgGGGCaGACGg -3'
miRNA:   3'- -CGuauUUCGCGC-UUGAgCUCGcUUGC- -5'
16443 3' -48.7 NC_004084.1 + 45044 0.66 0.970868
Target:  5'- uGCGgaaAAGGCGa-AGCaaCGAGCGAACGa -3'
miRNA:   3'- -CGUa--UUUCGCgcUUGa-GCUCGCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 51851 0.66 0.970868
Target:  5'- ---aAGAGCGCGuGGCUCGA-CGAGuCGa -3'
miRNA:   3'- cguaUUUCGCGC-UUGAGCUcGCUU-GC- -5'
16443 3' -48.7 NC_004084.1 + 25041 0.66 0.970868
Target:  5'- uGCAcGGAGCGCGuguggguaGACUCG-GCGGu-- -3'
miRNA:   3'- -CGUaUUUCGCGC--------UUGAGCuCGCUugc -5'
16443 3' -48.7 NC_004084.1 + 19490 0.67 0.967546
Target:  5'- aGCAgcGAG-GCGAGCagGAGCccggGAGCGa -3'
miRNA:   3'- -CGUauUUCgCGCUUGagCUCG----CUUGC- -5'
16443 3' -48.7 NC_004084.1 + 57941 0.67 0.963965
Target:  5'- aGCAggaucGAGGCGaCGAAC-CGGGC-AACGu -3'
miRNA:   3'- -CGUa----UUUCGC-GCUUGaGCUCGcUUGC- -5'
16443 3' -48.7 NC_004084.1 + 21942 0.67 0.960115
Target:  5'- cGguUGAAGUGCGGG-UCGAGaucuccCGGACGa -3'
miRNA:   3'- -CguAUUUCGCGCUUgAGCUC------GCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 16867 0.67 0.960115
Target:  5'- cGCA---AGUGgGAuCUCGAGCGcGGCGu -3'
miRNA:   3'- -CGUauuUCGCgCUuGAGCUCGC-UUGC- -5'
16443 3' -48.7 NC_004084.1 + 9608 0.67 0.960115
Target:  5'- uCGUAcguGCGCGucUUCGAGCGAucaACGc -3'
miRNA:   3'- cGUAUuu-CGCGCuuGAGCUCGCU---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.