miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16443 3' -48.7 NC_004084.1 + 6363 0.67 0.957675
Target:  5'- ---aGGGGCGCGAcCUCGAGaaaaaccucuacgaGAGCGc -3'
miRNA:   3'- cguaUUUCGCGCUuGAGCUCg-------------CUUGC- -5'
16443 3' -48.7 NC_004084.1 + 6461 0.67 0.9547
Target:  5'- cCGUGGAGCGgGAugucCUggaccucgcccggcUGAGCGAACGu -3'
miRNA:   3'- cGUAUUUCGCgCUu---GA--------------GCUCGCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 42978 0.67 0.951587
Target:  5'- cGCGaucGAGCGCcucgaugagGAACUCGAcGCGAuCGa -3'
miRNA:   3'- -CGUau-UUCGCG---------CUUGAGCU-CGCUuGC- -5'
16443 3' -48.7 NC_004084.1 + 48993 0.68 0.941916
Target:  5'- aGCAccgAGAGCGCGuGCUCGucaucGGCaAGCGc -3'
miRNA:   3'- -CGUa--UUUCGCGCuUGAGC-----UCGcUUGC- -5'
16443 3' -48.7 NC_004084.1 + 29178 0.68 0.941916
Target:  5'- aGCc--GGGCGCGAcgaguACUCGcccGCGAACa -3'
miRNA:   3'- -CGuauUUCGCGCU-----UGAGCu--CGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 325 0.68 0.936642
Target:  5'- uGCAUGAGGcCGcCGAACUCGucguUGAGCc -3'
miRNA:   3'- -CGUAUUUC-GC-GCUUGAGCuc--GCUUGc -5'
16443 3' -48.7 NC_004084.1 + 17837 0.68 0.936642
Target:  5'- ---aGAAGC-CGAGCUCGAGaCGGcCGa -3'
miRNA:   3'- cguaUUUCGcGCUUGAGCUC-GCUuGC- -5'
16443 3' -48.7 NC_004084.1 + 57407 0.68 0.931073
Target:  5'- cGCGUcgacGucGCcgGCGAGCUCGAGgUGGACa -3'
miRNA:   3'- -CGUA----UuuCG--CGCUUGAGCUC-GCUUGc -5'
16443 3' -48.7 NC_004084.1 + 2780 0.68 0.924603
Target:  5'- uGCGUGcAGaCGUGGcACUCGAGCGuguaccaGACGc -3'
miRNA:   3'- -CGUAUuUC-GCGCU-UGAGCUCGC-------UUGC- -5'
16443 3' -48.7 NC_004084.1 + 9046 0.69 0.919043
Target:  5'- cGCAUcGAGCGgGuaGAgUCGGGCGAcgucgACGa -3'
miRNA:   3'- -CGUAuUUCGCgC--UUgAGCUCGCU-----UGC- -5'
16443 3' -48.7 NC_004084.1 + 51204 0.69 0.912583
Target:  5'- gGCGcu-GGCGCGGGCUacUGGGCGugguGCGu -3'
miRNA:   3'- -CGUauuUCGCGCUUGA--GCUCGCu---UGC- -5'
16443 3' -48.7 NC_004084.1 + 42346 0.69 0.912583
Target:  5'- ---cGAGGCgGCgGAACUCGAGCGccaggccgAGCGg -3'
miRNA:   3'- cguaUUUCG-CG-CUUGAGCUCGC--------UUGC- -5'
16443 3' -48.7 NC_004084.1 + 27292 0.69 0.898783
Target:  5'- uCGUcAAGCGCGcGGCUCGA-CGAGCu -3'
miRNA:   3'- cGUAuUUCGCGC-UUGAGCUcGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 47122 0.7 0.891449
Target:  5'- uGCAUccGGUGCGAcGC-CGAGCGAGa- -3'
miRNA:   3'- -CGUAuuUCGCGCU-UGaGCUCGCUUgc -5'
16443 3' -48.7 NC_004084.1 + 15472 0.7 0.891449
Target:  5'- cGUAUAGAGUGC---UUCGAGCGGuCGg -3'
miRNA:   3'- -CGUAUUUCGCGcuuGAGCUCGCUuGC- -5'
16443 3' -48.7 NC_004084.1 + 44661 0.7 0.875939
Target:  5'- cGCcc--AGCGCGAcCUCGAggGCGAGCc -3'
miRNA:   3'- -CGuauuUCGCGCUuGAGCU--CGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 46947 0.7 0.875134
Target:  5'- uCGUGcccGAGCGgcugcuuCGAACUCGAGgUGAGCGg -3'
miRNA:   3'- cGUAU---UUCGC-------GCUUGAGCUC-GCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 43046 0.7 0.865273
Target:  5'- cGCGUGAAGgaGCGAGCaaagaaggcgagauUCGAGaGAACGu -3'
miRNA:   3'- -CGUAUUUCg-CGCUUG--------------AGCUCgCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 57359 0.71 0.845336
Target:  5'- cGCGacGAGUggcuguucgaccucgGCGAACUCGAGCGcGCc -3'
miRNA:   3'- -CGUauUUCG---------------CGCUUGAGCUCGCuUGc -5'
16443 3' -48.7 NC_004084.1 + 42032 0.71 0.823177
Target:  5'- -gGUGAGGC-CGAugUCGAGUGAGg- -3'
miRNA:   3'- cgUAUUUCGcGCUugAGCUCGCUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.