miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16443 3' -48.7 NC_004084.1 + 265 0.66 0.973939
Target:  5'- aGCuc-GAGCGUGcAGCUgGGGCaGACGg -3'
miRNA:   3'- -CGuauUUCGCGC-UUGAgCUCGcUUGC- -5'
16443 3' -48.7 NC_004084.1 + 325 0.68 0.936642
Target:  5'- uGCAUGAGGcCGcCGAACUCGucguUGAGCc -3'
miRNA:   3'- -CGUAUUUC-GC-GCUUGAGCuc--GCUUGc -5'
16443 3' -48.7 NC_004084.1 + 810 0.75 0.64035
Target:  5'- ---cGAAGCGCGAACuccucaacccguUCGAGaCGGGCGa -3'
miRNA:   3'- cguaUUUCGCGCUUG------------AGCUC-GCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 2780 0.68 0.924603
Target:  5'- uGCGUGcAGaCGUGGcACUCGAGCGuguaccaGACGc -3'
miRNA:   3'- -CGUAUuUC-GCGCU-UGAGCUCGC-------UUGC- -5'
16443 3' -48.7 NC_004084.1 + 4018 0.66 0.976768
Target:  5'- aCAUGAGGCGUcGACUgGAacgGCGAucGCGu -3'
miRNA:   3'- cGUAUUUCGCGcUUGAgCU---CGCU--UGC- -5'
16443 3' -48.7 NC_004084.1 + 6363 0.67 0.957675
Target:  5'- ---aGGGGCGCGAcCUCGAGaaaaaccucuacgaGAGCGc -3'
miRNA:   3'- cguaUUUCGCGCUuGAGCUCg-------------CUUGC- -5'
16443 3' -48.7 NC_004084.1 + 6461 0.67 0.9547
Target:  5'- cCGUGGAGCGgGAugucCUggaccucgcccggcUGAGCGAACGu -3'
miRNA:   3'- cGUAUUUCGCgCUu---GA--------------GCUCGCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 8102 0.72 0.783564
Target:  5'- gGCA-GAAcCGCGAugGCUCGAGCGAGUGg -3'
miRNA:   3'- -CGUaUUUcGCGCU--UGAGCUCGCUUGC- -5'
16443 3' -48.7 NC_004084.1 + 9046 0.69 0.919043
Target:  5'- cGCAUcGAGCGgGuaGAgUCGGGCGAcgucgACGa -3'
miRNA:   3'- -CGUAuUUCGCgC--UUgAGCUCGCU-----UGC- -5'
16443 3' -48.7 NC_004084.1 + 9608 0.67 0.960115
Target:  5'- uCGUAcguGCGCGucUUCGAGCGAucaACGc -3'
miRNA:   3'- cGUAUuu-CGCGCuuGAGCUCGCU---UGC- -5'
16443 3' -48.7 NC_004084.1 + 10444 0.66 0.976768
Target:  5'- uGCAUcc--CGCaGAaguACUCGAGCGGACc -3'
miRNA:   3'- -CGUAuuucGCG-CU---UGAGCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 13381 0.66 0.981739
Target:  5'- cGCAguccGAGCGCcAGUUCGAGCuGAACc -3'
miRNA:   3'- -CGUau--UUCGCGcUUGAGCUCG-CUUGc -5'
16443 3' -48.7 NC_004084.1 + 15258 0.66 0.981739
Target:  5'- cCGUGAA-CGCGAACUC-AGCGuACu -3'
miRNA:   3'- cGUAUUUcGCGCUUGAGcUCGCuUGc -5'
16443 3' -48.7 NC_004084.1 + 15472 0.7 0.891449
Target:  5'- cGUAUAGAGUGC---UUCGAGCGGuCGg -3'
miRNA:   3'- -CGUAUUUCGCGcuuGAGCUCGCUuGC- -5'
16443 3' -48.7 NC_004084.1 + 16867 0.67 0.960115
Target:  5'- cGCA---AGUGgGAuCUCGAGCGcGGCGu -3'
miRNA:   3'- -CGUauuUCGCgCUuGAGCUCGC-UUGC- -5'
16443 3' -48.7 NC_004084.1 + 17343 0.76 0.549734
Target:  5'- cGCcgGAGGCGaGGGCUCGAGUGAGg- -3'
miRNA:   3'- -CGuaUUUCGCgCUUGAGCUCGCUUgc -5'
16443 3' -48.7 NC_004084.1 + 17837 0.68 0.936642
Target:  5'- ---aGAAGC-CGAGCUCGAGaCGGcCGa -3'
miRNA:   3'- cguaUUUCGcGCUUGAGCUC-GCUuGC- -5'
16443 3' -48.7 NC_004084.1 + 18534 0.66 0.973939
Target:  5'- -gGUGAccAGUGCcgcaucGAACUCGGGUGGGCc -3'
miRNA:   3'- cgUAUU--UCGCG------CUUGAGCUCGCUUGc -5'
16443 3' -48.7 NC_004084.1 + 19490 0.67 0.967546
Target:  5'- aGCAgcGAG-GCGAGCagGAGCccggGAGCGa -3'
miRNA:   3'- -CGUauUUCgCGCUUGagCUCG----CUUGC- -5'
16443 3' -48.7 NC_004084.1 + 21942 0.67 0.960115
Target:  5'- cGguUGAAGUGCGGG-UCGAGaucuccCGGACGa -3'
miRNA:   3'- -CguAUUUCGCGCUUgAGCUC------GCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.