miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16443 5' -57.7 NC_004084.1 + 20858 0.66 0.612861
Target:  5'- gGugGcaCGUCGACCGC-GCCGGCg--- -3'
miRNA:   3'- -CugCa-GCAGUUGGUGcCGGCCGagau -5'
16443 5' -57.7 NC_004084.1 + 747 0.66 0.612861
Target:  5'- cGACGUCGgaggCGcuggACCACcaGGCCgaucGGCUCg- -3'
miRNA:   3'- -CUGCAGCa---GU----UGGUG--CCGG----CCGAGau -5'
16443 5' -57.7 NC_004084.1 + 48434 0.66 0.602045
Target:  5'- cGACGUCGUCGGCCaguACGGUgaacacgauguCGauGCUCa- -3'
miRNA:   3'- -CUGCAGCAGUUGG---UGCCG-----------GC--CGAGau -5'
16443 5' -57.7 NC_004084.1 + 31239 0.66 0.568713
Target:  5'- aGCGUCGcgaUCGuccugagauucucACCGCGGUCGaGCUCg- -3'
miRNA:   3'- cUGCAGC---AGU-------------UGGUGCCGGC-CGAGau -5'
16443 5' -57.7 NC_004084.1 + 56605 0.66 0.563376
Target:  5'- cGGCGUCGUC-GCCGguCGGCgaguucgccggaucgUGGCUCa- -3'
miRNA:   3'- -CUGCAGCAGuUGGU--GCCG---------------GCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 39612 0.66 0.556989
Target:  5'- uGGCGUCGcCGACCACacgcccuGGauguucccuccaaCCGGCUCg- -3'
miRNA:   3'- -CUGCAGCaGUUGGUG-------CC-------------GGCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 35439 0.67 0.527485
Target:  5'- cGCGagGUCGACCAggacuCGGUCGGcCUCg- -3'
miRNA:   3'- cUGCagCAGUUGGU-----GCCGGCC-GAGau -5'
16443 5' -57.7 NC_004084.1 + 39272 0.67 0.506772
Target:  5'- gGugGUCGUCGAUCGCGuCgCGGaCUCg- -3'
miRNA:   3'- -CugCAGCAGUUGGUGCcG-GCC-GAGau -5'
16443 5' -57.7 NC_004084.1 + 23188 0.68 0.486413
Target:  5'- gGugGUCGacgUCGAUCGCGaucGUCGGCUCg- -3'
miRNA:   3'- -CugCAGC---AGUUGGUGC---CGGCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 18710 0.69 0.418501
Target:  5'- cGGCGUCGUC-GCCGucacUGGCgGGUUCg- -3'
miRNA:   3'- -CUGCAGCAGuUGGU----GCCGgCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 27287 0.69 0.409275
Target:  5'- cGAUGUCGUCAAgCGCG--CGGCUCg- -3'
miRNA:   3'- -CUGCAGCAGUUgGUGCcgGCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 18812 0.7 0.360029
Target:  5'- gGACGUCGcCGGCCACguccaggaggacgguGGCgCGGCUUUc -3'
miRNA:   3'- -CUGCAGCaGUUGGUG---------------CCG-GCCGAGAu -5'
16443 5' -57.7 NC_004084.1 + 909 0.71 0.324337
Target:  5'- cGGCGUCGUCGgaguucGCUGCGGCCuGCUg-- -3'
miRNA:   3'- -CUGCAGCAGU------UGGUGCCGGcCGAgau -5'
16443 5' -57.7 NC_004084.1 + 29084 0.71 0.324337
Target:  5'- gGGCGUCGUC-GCCGCGGUagauGCUCa- -3'
miRNA:   3'- -CUGCAGCAGuUGGUGCCGgc--CGAGau -5'
16443 5' -57.7 NC_004084.1 + 19093 0.71 0.30155
Target:  5'- cGACGUCGaUCAgcACCGCGGC-GGCUa-- -3'
miRNA:   3'- -CUGCAGC-AGU--UGGUGCCGgCCGAgau -5'
16443 5' -57.7 NC_004084.1 + 24351 0.72 0.280018
Target:  5'- aACGUCGaaggCAACCGCGGUCGGUg--- -3'
miRNA:   3'- cUGCAGCa---GUUGGUGCCGGCCGagau -5'
16443 5' -57.7 NC_004084.1 + 11145 0.72 0.273117
Target:  5'- gGACGUCGUCGACCuCGuaguaggcGCCGGCg--- -3'
miRNA:   3'- -CUGCAGCAGUUGGuGC--------CGGCCGagau -5'
16443 5' -57.7 NC_004084.1 + 56842 0.73 0.24065
Target:  5'- cGACGUCGUCcugGACCcguucGCGGgcuCCGGCUCg- -3'
miRNA:   3'- -CUGCAGCAG---UUGG-----UGCC---GGCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 44394 0.73 0.24065
Target:  5'- cGAUGUCcaCGAgCGCGGCUGGCUCg- -3'
miRNA:   3'- -CUGCAGcaGUUgGUGCCGGCCGAGau -5'
16443 5' -57.7 NC_004084.1 + 13737 0.73 0.222757
Target:  5'- aACGUCGUCugUC-CGGUCGGCUCg- -3'
miRNA:   3'- cUGCAGCAGuuGGuGCCGGCCGAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.