miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16444 3' -53.7 NC_004084.1 + 1198 0.66 0.808009
Target:  5'- aACGGCUcgauccugAACGCUGGcuggcUCGGCGGCgGGa -3'
miRNA:   3'- aUGUUGG--------UUGUGGCC-----AGUCGUCGaCC- -5'
16444 3' -53.7 NC_004084.1 + 48915 0.66 0.808009
Target:  5'- -uCGGCCAcgACuuCCGGUCGGC-GCcGGg -3'
miRNA:   3'- auGUUGGU--UGu-GGCCAGUCGuCGaCC- -5'
16444 3' -53.7 NC_004084.1 + 15693 0.66 0.807045
Target:  5'- cGCAGCCGAucaacuCGCCGacgcgacagggucGUCAGCAucggugaucGCUGGc -3'
miRNA:   3'- aUGUUGGUU------GUGGC-------------CAGUCGU---------CGACC- -5'
16444 3' -53.7 NC_004084.1 + 19098 0.66 0.798281
Target:  5'- -uCGAUCAGCACCG--CGGCGGCUa- -3'
miRNA:   3'- auGUUGGUUGUGGCcaGUCGUCGAcc -5'
16444 3' -53.7 NC_004084.1 + 29831 0.66 0.798281
Target:  5'- gACGACCAcuGCGuCCGuagCAGCGGC-GGa -3'
miRNA:   3'- aUGUUGGU--UGU-GGCca-GUCGUCGaCC- -5'
16444 3' -53.7 NC_004084.1 + 16916 0.66 0.768068
Target:  5'- gGCGAUCGugGCCGGgu-GCGGUUcGGc -3'
miRNA:   3'- aUGUUGGUugUGGCCaguCGUCGA-CC- -5'
16444 3' -53.7 NC_004084.1 + 10306 0.66 0.768068
Target:  5'- gGCAACCAGaugccguccuCACugaCGGUCAGCGGUUc- -3'
miRNA:   3'- aUGUUGGUU----------GUG---GCCAGUCGUCGAcc -5'
16444 3' -53.7 NC_004084.1 + 49533 0.67 0.757692
Target:  5'- -cCGAgUCGACGCU-GUCAGCGGUUGGu -3'
miRNA:   3'- auGUU-GGUUGUGGcCAGUCGUCGACC- -5'
16444 3' -53.7 NC_004084.1 + 9715 0.67 0.757692
Target:  5'- --uGGCCGACGCCGauGcCGGCGGCUucgaGGa -3'
miRNA:   3'- augUUGGUUGUGGC--CaGUCGUCGA----CC- -5'
16444 3' -53.7 NC_004084.1 + 39854 0.67 0.757692
Target:  5'- gGCGGCCGcgGCGCC-GUCgAGCAcGCUGa -3'
miRNA:   3'- aUGUUGGU--UGUGGcCAG-UCGU-CGACc -5'
16444 3' -53.7 NC_004084.1 + 36988 0.67 0.757692
Target:  5'- --gGAUCAACGagcugaaguaCGGUCucucGCAGCUGGa -3'
miRNA:   3'- augUUGGUUGUg---------GCCAGu---CGUCGACC- -5'
16444 3' -53.7 NC_004084.1 + 31129 0.67 0.747183
Target:  5'- aACAG-CGGCGCCGcgaucGUCAGCGGUUcGGa -3'
miRNA:   3'- aUGUUgGUUGUGGC-----CAGUCGUCGA-CC- -5'
16444 3' -53.7 NC_004084.1 + 58189 0.67 0.747183
Target:  5'- cUGCGugCAucgcuCGCCGGUCGaCuucGCUGGg -3'
miRNA:   3'- -AUGUugGUu----GUGGCCAGUcGu--CGACC- -5'
16444 3' -53.7 NC_004084.1 + 34982 0.67 0.746126
Target:  5'- cGCuuCCAuCGCCGccugcguGUCAGCgaucAGCUGGg -3'
miRNA:   3'- aUGuuGGUuGUGGC-------CAGUCG----UCGACC- -5'
16444 3' -53.7 NC_004084.1 + 29438 0.69 0.61507
Target:  5'- --aGGCCGACGUCGGUCGcGC-GCUGGu -3'
miRNA:   3'- augUUGGUUGUGGCCAGU-CGuCGACC- -5'
16444 3' -53.7 NC_004084.1 + 54521 0.69 0.61507
Target:  5'- cUACAACCGGCACCuGGaCGGCGagaucguccggcGCUGu -3'
miRNA:   3'- -AUGUUGGUUGUGG-CCaGUCGU------------CGACc -5'
16444 3' -53.7 NC_004084.1 + 3643 0.69 0.61507
Target:  5'- gGCGAUCAguaGCGCUGG-CGGgGGUUGGg -3'
miRNA:   3'- aUGUUGGU---UGUGGCCaGUCgUCGACC- -5'
16444 3' -53.7 NC_004084.1 + 35886 0.69 0.603905
Target:  5'- --aGGCCAGUGCCGGUCGGaCGucccGCUGGa -3'
miRNA:   3'- augUUGGUUGUGGCCAGUC-GU----CGACC- -5'
16444 3' -53.7 NC_004084.1 + 11167 0.69 0.60056
Target:  5'- gGC-GCCGGCgaGCCGGUCguaucguucguuccAGCAGCUGc -3'
miRNA:   3'- aUGuUGGUUG--UGGCCAG--------------UCGUCGACc -5'
16444 3' -53.7 NC_004084.1 + 54246 0.69 0.592765
Target:  5'- aGCGAUCAGCGCCG-UCGGCgaGGUUGa -3'
miRNA:   3'- aUGUUGGUUGUGGCcAGUCG--UCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.