miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 9237 0.66 0.787861
Target:  5'- cUCGAUCaggGCGUCcaGCGu-CUCGGggUCGUCg -3'
miRNA:   3'- -AGCUAG---CGCAG--CGCcuGAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 31539 0.66 0.787861
Target:  5'- gCGAUCGCcUCGgaGGACaUCGcgcuaccgacaAUCGUCg -3'
miRNA:   3'- aGCUAGCGcAGCg-CCUG-AGC-----------UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 45492 0.66 0.787861
Target:  5'- gUCGAUCaGCGUCuaccuggcCGGGC-CGGUCGg- -3'
miRNA:   3'- -AGCUAG-CGCAGc-------GCCUGaGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 56472 0.66 0.77812
Target:  5'- aUGAUCGCGgggUCGUaGGCcCGGUCGUa -3'
miRNA:   3'- aGCUAGCGC---AGCGcCUGaGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 27470 0.66 0.77812
Target:  5'- aCGGUCgGCGUCcuCGaGCUCGA-CGUCg -3'
miRNA:   3'- aGCUAG-CGCAGc-GCcUGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 20725 0.66 0.77812
Target:  5'- -gGAUCcCGUUGCuGGugUCGAcgaCGUCg -3'
miRNA:   3'- agCUAGcGCAGCG-CCugAGCUa--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 16630 0.66 0.768233
Target:  5'- gUCGAUCGUGaCGCc--CUCG-UCGUCg -3'
miRNA:   3'- -AGCUAGCGCaGCGccuGAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 30030 0.66 0.758211
Target:  5'- cCGAUCGaggucUCGCGGgggccGCUCGcGUCGUUg -3'
miRNA:   3'- aGCUAGCgc---AGCGCC-----UGAGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37918 0.66 0.758211
Target:  5'- gUCGAUCugauguCGUCGUcGGCggGAUCGUCg -3'
miRNA:   3'- -AGCUAGc-----GCAGCGcCUGagCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 6166 0.66 0.758211
Target:  5'- gCGAUCGgGcUCcagGUGGAcCUCGAgcUCGUCu -3'
miRNA:   3'- aGCUAGCgC-AG---CGCCU-GAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 2629 0.66 0.748065
Target:  5'- -gGAUC-CGgacaCGGACUCGAUCGUg -3'
miRNA:   3'- agCUAGcGCagc-GCCUGAGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 29861 0.66 0.748065
Target:  5'- cUGAUCGUccaCGCGGugauCUCG-UCGUCa -3'
miRNA:   3'- aGCUAGCGca-GCGCCu---GAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37114 0.66 0.748065
Target:  5'- -aGAUCGCGgagCGUGGuggcuuCUCGAcgcggUCGUUc -3'
miRNA:   3'- agCUAGCGCa--GCGCCu-----GAGCU-----AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 13914 0.67 0.737805
Target:  5'- gCGAcCGCuUCGCGGAaCUCc-UCGUCa -3'
miRNA:   3'- aGCUaGCGcAGCGCCU-GAGcuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 10032 0.67 0.737805
Target:  5'- aCGAUgcCGCGUCGaCGGugaccuaucacGgUCGAUCGUa -3'
miRNA:   3'- aGCUA--GCGCAGC-GCC-----------UgAGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 49626 0.67 0.706453
Target:  5'- -aGAUCuCGUCGcCGGGCUCcGUCGa- -3'
miRNA:   3'- agCUAGcGCAGC-GCCUGAGcUAGCag -5'
16446 3' -55.1 NC_004084.1 + 46276 0.67 0.706453
Target:  5'- aUCcAUCGCuucGUCGaCGGAgUCGuaGUCGUCg -3'
miRNA:   3'- -AGcUAGCG---CAGC-GCCUgAGC--UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 16095 0.67 0.706453
Target:  5'- gUCGAUCuCGUCccgaCGGuCgucgCGAUCGUCg -3'
miRNA:   3'- -AGCUAGcGCAGc---GCCuGa---GCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35999 0.67 0.704337
Target:  5'- cCGAcCGCGUCGuCGGAgccgagaagcgUGAUCGUCc -3'
miRNA:   3'- aGCUaGCGCAGC-GCCUga---------GCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 14707 0.67 0.695847
Target:  5'- aUCGAUgGCGUCcUGGAgCUCguugaGAUCGUUg -3'
miRNA:   3'- -AGCUAgCGCAGcGCCU-GAG-----CUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.