Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16446 | 3' | -55.1 | NC_004084.1 | + | 39279 | 1.11 | 0.001061 |
Target: 5'- gUCGAUCGCGUCGCGGACUCGAUCGUCg -3' miRNA: 3'- -AGCUAGCGCAGCGCCUGAGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 12440 | 0.78 | 0.17984 |
Target: 5'- aUGAUCGCGUCGaCGuGC-CGAUCGUCg -3' miRNA: 3'- aGCUAGCGCAGC-GCcUGaGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 16516 | 0.77 | 0.227612 |
Target: 5'- gCGAUCGCGUCGCcg---CGGUCGUCg -3' miRNA: 3'- aGCUAGCGCAGCGccugaGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 15424 | 0.76 | 0.243288 |
Target: 5'- cUCGAUCGCGUCGaguuccucaucgaGGcGCUCGAUCG-Cg -3' miRNA: 3'- -AGCUAGCGCAGCg------------CC-UGAGCUAGCaG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 17219 | 0.75 | 0.285697 |
Target: 5'- uUCGccaGCGUCGCGGGCgUCGuguUCGUCc -3' miRNA: 3'- -AGCuagCGCAGCGCCUG-AGCu--AGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 23198 | 0.75 | 0.292827 |
Target: 5'- gUCGAUCGCGaUCGUcGGCUCGAUCc-- -3' miRNA: 3'- -AGCUAGCGC-AGCGcCUGAGCUAGcag -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 41574 | 0.74 | 0.354863 |
Target: 5'- gCGAUCGCGUcCGUGaGCUagcggaGAUCGUCg -3' miRNA: 3'- aGCUAGCGCA-GCGCcUGAg-----CUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 633 | 0.73 | 0.36324 |
Target: 5'- gCGAUCuCGUCGUGGAgcucCUCGAcggCGUCg -3' miRNA: 3'- aGCUAGcGCAGCGCCU----GAGCUa--GCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 11405 | 0.73 | 0.366629 |
Target: 5'- aUCGAUCGCGacguccucgaggaacUCGCGGucguCUCGAaguUCGUg -3' miRNA: 3'- -AGCUAGCGC---------------AGCGCCu---GAGCU---AGCAg -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 56005 | 0.72 | 0.444559 |
Target: 5'- aCGAUCGCGUacuuUGCccucGACUCG-UCGUCg -3' miRNA: 3'- aGCUAGCGCA----GCGc---CUGAGCuAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 35433 | 0.72 | 0.444559 |
Target: 5'- cUCGcUCGCGaggUCGaccaGGACUCGGUCGg- -3' miRNA: 3'- -AGCuAGCGC---AGCg---CCUGAGCUAGCag -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 51540 | 0.72 | 0.429356 |
Target: 5'- uUCGAUCGCGUCGUGGcCagccaucaacgccucUCGGuUCGUg -3' miRNA: 3'- -AGCUAGCGCAGCGCCuG---------------AGCU-AGCAg -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 51755 | 0.72 | 0.425603 |
Target: 5'- uUCG-UgGCGUCGuCGGGCUCu-UCGUCg -3' miRNA: 3'- -AGCuAgCGCAGC-GCCUGAGcuAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 26014 | 0.71 | 0.463979 |
Target: 5'- cUCG-UCGaCGggaccgaaCGCGGACUCGAUCGa- -3' miRNA: 3'- -AGCuAGC-GCa-------GCGCCUGAGCUAGCag -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 8280 | 0.71 | 0.490878 |
Target: 5'- aCGGUCGUGU-GCGGAaCUCGGcaucccguugggcuUCGUCc -3' miRNA: 3'- aGCUAGCGCAgCGCCU-GAGCU--------------AGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 49847 | 0.71 | 0.473854 |
Target: 5'- -aGGUCGCGcUCGCucaccuugucGGACUCGGUgaggaCGUCg -3' miRNA: 3'- agCUAGCGC-AGCG----------CCUGAGCUA-----GCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 50537 | 0.71 | 0.493912 |
Target: 5'- -gGAUCGCGUCgaggaGCGGAgucucCUCGAUCauGUCc -3' miRNA: 3'- agCUAGCGCAG-----CGCCU-----GAGCUAG--CAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 53311 | 0.7 | 0.535123 |
Target: 5'- gUUGAcccgGCGaUCGCGGGCUCGGUucaCGUCu -3' miRNA: 3'- -AGCUag--CGC-AGCGCCUGAGCUA---GCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 39077 | 0.7 | 0.54562 |
Target: 5'- -aGGUCGCuGUCGCGcuugagugaGACagucgcccgUCGAUCGUCg -3' miRNA: 3'- agCUAGCG-CAGCGC---------CUG---------AGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 45388 | 0.7 | 0.556183 |
Target: 5'- gUCGAUCGUccgGUCGUgaaGGuguuGCUCGAggUCGUCg -3' miRNA: 3'- -AGCUAGCG---CAGCG---CC----UGAGCU--AGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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