miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 39279 1.11 0.001061
Target:  5'- gUCGAUCGCGUCGCGGACUCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGCAGCGCCUGAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 12440 0.78 0.17984
Target:  5'- aUGAUCGCGUCGaCGuGC-CGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCAGC-GCcUGaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 16516 0.77 0.227612
Target:  5'- gCGAUCGCGUCGCcg---CGGUCGUCg -3'
miRNA:   3'- aGCUAGCGCAGCGccugaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 15424 0.76 0.243288
Target:  5'- cUCGAUCGCGUCGaguuccucaucgaGGcGCUCGAUCG-Cg -3'
miRNA:   3'- -AGCUAGCGCAGCg------------CC-UGAGCUAGCaG- -5'
16446 3' -55.1 NC_004084.1 + 17219 0.75 0.285697
Target:  5'- uUCGccaGCGUCGCGGGCgUCGuguUCGUCc -3'
miRNA:   3'- -AGCuagCGCAGCGCCUG-AGCu--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 23198 0.75 0.292827
Target:  5'- gUCGAUCGCGaUCGUcGGCUCGAUCc-- -3'
miRNA:   3'- -AGCUAGCGC-AGCGcCUGAGCUAGcag -5'
16446 3' -55.1 NC_004084.1 + 41574 0.74 0.354863
Target:  5'- gCGAUCGCGUcCGUGaGCUagcggaGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCA-GCGCcUGAg-----CUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 633 0.73 0.36324
Target:  5'- gCGAUCuCGUCGUGGAgcucCUCGAcggCGUCg -3'
miRNA:   3'- aGCUAGcGCAGCGCCU----GAGCUa--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 11405 0.73 0.366629
Target:  5'- aUCGAUCGCGacguccucgaggaacUCGCGGucguCUCGAaguUCGUg -3'
miRNA:   3'- -AGCUAGCGC---------------AGCGCCu---GAGCU---AGCAg -5'
16446 3' -55.1 NC_004084.1 + 51755 0.72 0.425603
Target:  5'- uUCG-UgGCGUCGuCGGGCUCu-UCGUCg -3'
miRNA:   3'- -AGCuAgCGCAGC-GCCUGAGcuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 51540 0.72 0.429356
Target:  5'- uUCGAUCGCGUCGUGGcCagccaucaacgccucUCGGuUCGUg -3'
miRNA:   3'- -AGCUAGCGCAGCGCCuG---------------AGCU-AGCAg -5'
16446 3' -55.1 NC_004084.1 + 56005 0.72 0.444559
Target:  5'- aCGAUCGCGUacuuUGCccucGACUCG-UCGUCg -3'
miRNA:   3'- aGCUAGCGCA----GCGc---CUGAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35433 0.72 0.444559
Target:  5'- cUCGcUCGCGaggUCGaccaGGACUCGGUCGg- -3'
miRNA:   3'- -AGCuAGCGC---AGCg---CCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 26014 0.71 0.463979
Target:  5'- cUCG-UCGaCGggaccgaaCGCGGACUCGAUCGa- -3'
miRNA:   3'- -AGCuAGC-GCa-------GCGCCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 49847 0.71 0.473854
Target:  5'- -aGGUCGCGcUCGCucaccuugucGGACUCGGUgaggaCGUCg -3'
miRNA:   3'- agCUAGCGC-AGCG----------CCUGAGCUA-----GCAG- -5'
16446 3' -55.1 NC_004084.1 + 8280 0.71 0.490878
Target:  5'- aCGGUCGUGU-GCGGAaCUCGGcaucccguugggcuUCGUCc -3'
miRNA:   3'- aGCUAGCGCAgCGCCU-GAGCU--------------AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 50537 0.71 0.493912
Target:  5'- -gGAUCGCGUCgaggaGCGGAgucucCUCGAUCauGUCc -3'
miRNA:   3'- agCUAGCGCAG-----CGCCU-----GAGCUAG--CAG- -5'
16446 3' -55.1 NC_004084.1 + 52176 0.7 0.511261
Target:  5'- gUCGAcCGCGUCGggaucgacgcuaucCGGAauCUCGAccUCGUCg -3'
miRNA:   3'- -AGCUaGCGCAGC--------------GCCU--GAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 53311 0.7 0.535123
Target:  5'- gUUGAcccgGCGaUCGCGGGCUCGGUucaCGUCu -3'
miRNA:   3'- -AGCUag--CGC-AGCGCCUGAGCUA---GCAG- -5'
16446 3' -55.1 NC_004084.1 + 39077 0.7 0.54562
Target:  5'- -aGGUCGCuGUCGCGcuugagugaGACagucgcccgUCGAUCGUCg -3'
miRNA:   3'- agCUAGCG-CAGCGC---------CUG---------AGCUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.