Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16446 | 3' | -55.1 | NC_004084.1 | + | 39077 | 0.7 | 0.54562 |
Target: 5'- -aGGUCGCuGUCGCGcuugagugaGACagucgcccgUCGAUCGUCg -3' miRNA: 3'- agCUAGCG-CAGCGC---------CUG---------AGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 29690 | 0.7 | 0.549838 |
Target: 5'- gCGA-CGCgGUCGCGGACgcuguccuggcugagUCGcGUCGUCu -3' miRNA: 3'- aGCUaGCG-CAGCGCCUG---------------AGC-UAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 27060 | 0.7 | 0.556183 |
Target: 5'- gUCGAUCGCG-CGauG-CUCGA-CGUCg -3' miRNA: 3'- -AGCUAGCGCaGCgcCuGAGCUaGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 47969 | 0.7 | 0.556183 |
Target: 5'- -gGAUCGCcUCGCGGGCUucCGGgauguuguucUCGUCc -3' miRNA: 3'- agCUAGCGcAGCGCCUGA--GCU----------AGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 45388 | 0.7 | 0.556183 |
Target: 5'- gUCGAUCGUccgGUCGUgaaGGuguuGCUCGAggUCGUCg -3' miRNA: 3'- -AGCUAGCG---CAGCG---CC----UGAGCU--AGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 11928 | 0.7 | 0.556183 |
Target: 5'- cCGG-CGaCGUCGCgaccagcgaGGACUCGAUCGa- -3' miRNA: 3'- aGCUaGC-GCAGCG---------CCUGAGCUAGCag -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 49343 | 0.7 | 0.566805 |
Target: 5'- gCGAUCGUGUCGaGG---UGAUCGUCg -3' miRNA: 3'- aGCUAGCGCAGCgCCugaGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 35885 | 0.69 | 0.577477 |
Target: 5'- aUCGGUCGUcuUCGgcCGGAggCGAUCGUCg -3' miRNA: 3'- -AGCUAGCGc-AGC--GCCUgaGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 10505 | 0.69 | 0.597868 |
Target: 5'- -gGAUCGCGcggcaccUCGCGGAg-CGAcCGUCg -3' miRNA: 3'- agCUAGCGC-------AGCGCCUgaGCUaGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 45018 | 0.69 | 0.598945 |
Target: 5'- aCGAUCGaGUCGCGGuucaGCUCGAacuggCGcUCg -3' miRNA: 3'- aGCUAGCgCAGCGCC----UGAGCUa----GC-AG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 53923 | 0.69 | 0.606487 |
Target: 5'- cUCGAcauccugcaguuUCGUGUCG-GGcuucgccagcucgaACUCGAUCGUCc -3' miRNA: 3'- -AGCU------------AGCGCAGCgCC--------------UGAGCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 35352 | 0.69 | 0.609724 |
Target: 5'- cUCG-UCGCGUCGCcGGCgaCGAUCG-Cg -3' miRNA: 3'- -AGCuAGCGCAGCGcCUGa-GCUAGCaG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 16739 | 0.69 | 0.620521 |
Target: 5'- cCGGUCuGCaUCGCGGcCUCGAUgaCGUUg -3' miRNA: 3'- aGCUAG-CGcAGCGCCuGAGCUA--GCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 48985 | 0.68 | 0.652936 |
Target: 5'- gUCGAcgUCGCGgcccaucgCGCGguccGugUCGAUCGUg -3' miRNA: 3'- -AGCU--AGCGCa-------GCGC----CugAGCUAGCAg -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 32410 | 0.68 | 0.663716 |
Target: 5'- uUCGGUCcCGUCGaCGaGCUCGcacUCGUCg -3' miRNA: 3'- -AGCUAGcGCAGC-GCcUGAGCu--AGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 54026 | 0.68 | 0.685182 |
Target: 5'- cCGAagUCGUGcUGCuuGGGCUgGAUCGUCu -3' miRNA: 3'- aGCU--AGCGCaGCG--CCUGAgCUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 2429 | 0.68 | 0.685182 |
Target: 5'- gCGAUCGUGg-GCGGugaaUCGAcCGUCg -3' miRNA: 3'- aGCUAGCGCagCGCCug--AGCUaGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 14707 | 0.67 | 0.695847 |
Target: 5'- aUCGAUgGCGUCcUGGAgCUCguugaGAUCGUUg -3' miRNA: 3'- -AGCUAgCGCAGcGCCU-GAG-----CUAGCAG- -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 57634 | 0.67 | 0.695847 |
Target: 5'- cUCGAggucgCGCGUCGCcucGACgagcCGAUCGg- -3' miRNA: 3'- -AGCUa----GCGCAGCGc--CUGa---GCUAGCag -5' |
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16446 | 3' | -55.1 | NC_004084.1 | + | 11107 | 0.67 | 0.695847 |
Target: 5'- uUCGAUCGaCGUCucguCGGACgagUCGGUCcUCa -3' miRNA: 3'- -AGCUAGC-GCAGc---GCCUG---AGCUAGcAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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