miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 11107 0.67 0.695847
Target:  5'- uUCGAUCGaCGUCucguCGGACgagUCGGUCcUCa -3'
miRNA:   3'- -AGCUAGC-GCAGc---GCCUG---AGCUAGcAG- -5'
16446 3' -55.1 NC_004084.1 + 14707 0.67 0.695847
Target:  5'- aUCGAUgGCGUCcUGGAgCUCguugaGAUCGUUg -3'
miRNA:   3'- -AGCUAgCGCAGcGCCU-GAG-----CUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 57634 0.67 0.695847
Target:  5'- cUCGAggucgCGCGUCGCcucGACgagcCGAUCGg- -3'
miRNA:   3'- -AGCUa----GCGCAGCGc--CUGa---GCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 2429 0.68 0.685182
Target:  5'- gCGAUCGUGg-GCGGugaaUCGAcCGUCg -3'
miRNA:   3'- aGCUAGCGCagCGCCug--AGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 54026 0.68 0.685182
Target:  5'- cCGAagUCGUGcUGCuuGGGCUgGAUCGUCu -3'
miRNA:   3'- aGCU--AGCGCaGCG--CCUGAgCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 32410 0.68 0.663716
Target:  5'- uUCGGUCcCGUCGaCGaGCUCGcacUCGUCg -3'
miRNA:   3'- -AGCUAGcGCAGC-GCcUGAGCu--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 48985 0.68 0.652936
Target:  5'- gUCGAcgUCGCGgcccaucgCGCGguccGugUCGAUCGUg -3'
miRNA:   3'- -AGCU--AGCGCa-------GCGC----CugAGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 16739 0.69 0.620521
Target:  5'- cCGGUCuGCaUCGCGGcCUCGAUgaCGUUg -3'
miRNA:   3'- aGCUAG-CGcAGCGCCuGAGCUA--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 35352 0.69 0.609724
Target:  5'- cUCG-UCGCGUCGCcGGCgaCGAUCG-Cg -3'
miRNA:   3'- -AGCuAGCGCAGCGcCUGa-GCUAGCaG- -5'
16446 3' -55.1 NC_004084.1 + 53923 0.69 0.606487
Target:  5'- cUCGAcauccugcaguuUCGUGUCG-GGcuucgccagcucgaACUCGAUCGUCc -3'
miRNA:   3'- -AGCU------------AGCGCAGCgCC--------------UGAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 45018 0.69 0.598945
Target:  5'- aCGAUCGaGUCGCGGuucaGCUCGAacuggCGcUCg -3'
miRNA:   3'- aGCUAGCgCAGCGCC----UGAGCUa----GC-AG- -5'
16446 3' -55.1 NC_004084.1 + 10505 0.69 0.597868
Target:  5'- -gGAUCGCGcggcaccUCGCGGAg-CGAcCGUCg -3'
miRNA:   3'- agCUAGCGC-------AGCGCCUgaGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35885 0.69 0.577477
Target:  5'- aUCGGUCGUcuUCGgcCGGAggCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGc-AGC--GCCUgaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 49343 0.7 0.566805
Target:  5'- gCGAUCGUGUCGaGG---UGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCAGCgCCugaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 27060 0.7 0.556183
Target:  5'- gUCGAUCGCG-CGauG-CUCGA-CGUCg -3'
miRNA:   3'- -AGCUAGCGCaGCgcCuGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 11928 0.7 0.556183
Target:  5'- cCGG-CGaCGUCGCgaccagcgaGGACUCGAUCGa- -3'
miRNA:   3'- aGCUaGC-GCAGCG---------CCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 45388 0.7 0.556183
Target:  5'- gUCGAUCGUccgGUCGUgaaGGuguuGCUCGAggUCGUCg -3'
miRNA:   3'- -AGCUAGCG---CAGCG---CC----UGAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 47969 0.7 0.556183
Target:  5'- -gGAUCGCcUCGCGGGCUucCGGgauguuguucUCGUCc -3'
miRNA:   3'- agCUAGCGcAGCGCCUGA--GCU----------AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 29690 0.7 0.549838
Target:  5'- gCGA-CGCgGUCGCGGACgcuguccuggcugagUCGcGUCGUCu -3'
miRNA:   3'- aGCUaGCG-CAGCGCCUG---------------AGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 39077 0.7 0.54562
Target:  5'- -aGGUCGCuGUCGCGcuugagugaGACagucgcccgUCGAUCGUCg -3'
miRNA:   3'- agCUAGCG-CAGCGC---------CUG---------AGCUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.