miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 17219 0.75 0.285697
Target:  5'- uUCGccaGCGUCGCGGGCgUCGuguUCGUCc -3'
miRNA:   3'- -AGCuagCGCAGCGCCUG-AGCu--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 20725 0.66 0.77812
Target:  5'- -gGAUCcCGUUGCuGGugUCGAcgaCGUCg -3'
miRNA:   3'- agCUAGcGCAGCG-CCugAGCUa--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 23198 0.75 0.292827
Target:  5'- gUCGAUCGCGaUCGUcGGCUCGAUCc-- -3'
miRNA:   3'- -AGCUAGCGC-AGCGcCUGAGCUAGcag -5'
16446 3' -55.1 NC_004084.1 + 26014 0.71 0.463979
Target:  5'- cUCG-UCGaCGggaccgaaCGCGGACUCGAUCGa- -3'
miRNA:   3'- -AGCuAGC-GCa-------GCGCCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 27060 0.7 0.556183
Target:  5'- gUCGAUCGCG-CGauG-CUCGA-CGUCg -3'
miRNA:   3'- -AGCUAGCGCaGCgcCuGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 27470 0.66 0.77812
Target:  5'- aCGGUCgGCGUCcuCGaGCUCGA-CGUCg -3'
miRNA:   3'- aGCUAG-CGCAGc-GCcUGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 29690 0.7 0.549838
Target:  5'- gCGA-CGCgGUCGCGGACgcuguccuggcugagUCGcGUCGUCu -3'
miRNA:   3'- aGCUaGCG-CAGCGCCUG---------------AGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 29861 0.66 0.748065
Target:  5'- cUGAUCGUccaCGCGGugauCUCG-UCGUCa -3'
miRNA:   3'- aGCUAGCGca-GCGCCu---GAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 30030 0.66 0.758211
Target:  5'- cCGAUCGaggucUCGCGGgggccGCUCGcGUCGUUg -3'
miRNA:   3'- aGCUAGCgc---AGCGCC-----UGAGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 31539 0.66 0.787861
Target:  5'- gCGAUCGCcUCGgaGGACaUCGcgcuaccgacaAUCGUCg -3'
miRNA:   3'- aGCUAGCGcAGCg-CCUG-AGC-----------UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 32410 0.68 0.663716
Target:  5'- uUCGGUCcCGUCGaCGaGCUCGcacUCGUCg -3'
miRNA:   3'- -AGCUAGcGCAGC-GCcUGAGCu--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35352 0.69 0.609724
Target:  5'- cUCG-UCGCGUCGCcGGCgaCGAUCG-Cg -3'
miRNA:   3'- -AGCuAGCGCAGCGcCUGa-GCUAGCaG- -5'
16446 3' -55.1 NC_004084.1 + 35433 0.72 0.444559
Target:  5'- cUCGcUCGCGaggUCGaccaGGACUCGGUCGg- -3'
miRNA:   3'- -AGCuAGCGC---AGCg---CCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 35885 0.69 0.577477
Target:  5'- aUCGGUCGUcuUCGgcCGGAggCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGc-AGC--GCCUgaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35999 0.67 0.704337
Target:  5'- cCGAcCGCGUCGuCGGAgccgagaagcgUGAUCGUCc -3'
miRNA:   3'- aGCUaGCGCAGC-GCCUga---------GCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37114 0.66 0.748065
Target:  5'- -aGAUCGCGgagCGUGGuggcuuCUCGAcgcggUCGUUc -3'
miRNA:   3'- agCUAGCGCa--GCGCCu-----GAGCU-----AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37918 0.66 0.758211
Target:  5'- gUCGAUCugauguCGUCGUcGGCggGAUCGUCg -3'
miRNA:   3'- -AGCUAGc-----GCAGCGcCUGagCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 39077 0.7 0.54562
Target:  5'- -aGGUCGCuGUCGCGcuugagugaGACagucgcccgUCGAUCGUCg -3'
miRNA:   3'- agCUAGCG-CAGCGC---------CUG---------AGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 39279 1.11 0.001061
Target:  5'- gUCGAUCGCGUCGCGGACUCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGCAGCGCCUGAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 41574 0.74 0.354863
Target:  5'- gCGAUCGCGUcCGUGaGCUagcggaGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCA-GCGCcUGAg-----CUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.