miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 39279 1.11 0.001061
Target:  5'- gUCGAUCGCGUCGCGGACUCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGCAGCGCCUGAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 45492 0.66 0.787861
Target:  5'- gUCGAUCaGCGUCuaccuggcCGGGC-CGGUCGg- -3'
miRNA:   3'- -AGCUAG-CGCAGc-------GCCUGaGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 27470 0.66 0.77812
Target:  5'- aCGGUCgGCGUCcuCGaGCUCGA-CGUCg -3'
miRNA:   3'- aGCUAG-CGCAGc-GCcUGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 20725 0.66 0.77812
Target:  5'- -gGAUCcCGUUGCuGGugUCGAcgaCGUCg -3'
miRNA:   3'- agCUAGcGCAGCG-CCugAGCUa--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 30030 0.66 0.758211
Target:  5'- cCGAUCGaggucUCGCGGgggccGCUCGcGUCGUUg -3'
miRNA:   3'- aGCUAGCgc---AGCGCC-----UGAGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37114 0.66 0.748065
Target:  5'- -aGAUCGCGgagCGUGGuggcuuCUCGAcgcggUCGUUc -3'
miRNA:   3'- agCUAGCGCa--GCGCCu-----GAGCU-----AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 29861 0.66 0.748065
Target:  5'- cUGAUCGUccaCGCGGugauCUCG-UCGUCa -3'
miRNA:   3'- aGCUAGCGca-GCGCCu---GAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 2629 0.66 0.748065
Target:  5'- -gGAUC-CGgacaCGGACUCGAUCGUg -3'
miRNA:   3'- agCUAGcGCagc-GCCUGAGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 10032 0.67 0.737805
Target:  5'- aCGAUgcCGCGUCGaCGGugaccuaucacGgUCGAUCGUa -3'
miRNA:   3'- aGCUA--GCGCAGC-GCC-----------UgAGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 14707 0.67 0.695847
Target:  5'- aUCGAUgGCGUCcUGGAgCUCguugaGAUCGUUg -3'
miRNA:   3'- -AGCUAgCGCAGcGCCU-GAG-----CUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 11107 0.67 0.695847
Target:  5'- uUCGAUCGaCGUCucguCGGACgagUCGGUCcUCa -3'
miRNA:   3'- -AGCUAGC-GCAGc---GCCUG---AGCUAGcAG- -5'
16446 3' -55.1 NC_004084.1 + 41574 0.74 0.354863
Target:  5'- gCGAUCGCGUcCGUGaGCUagcggaGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCA-GCGCcUGAg-----CUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 53311 0.7 0.535123
Target:  5'- gUUGAcccgGCGaUCGCGGGCUCGGUucaCGUCu -3'
miRNA:   3'- -AGCUag--CGC-AGCGCCUGAGCUA---GCAG- -5'
16446 3' -55.1 NC_004084.1 + 29690 0.7 0.549838
Target:  5'- gCGA-CGCgGUCGCGGACgcuguccuggcugagUCGcGUCGUCu -3'
miRNA:   3'- aGCUaGCG-CAGCGCCUG---------------AGC-UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 11928 0.7 0.556183
Target:  5'- cCGG-CGaCGUCGCgaccagcgaGGACUCGAUCGa- -3'
miRNA:   3'- aGCUaGC-GCAGCG---------CCUGAGCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 35352 0.69 0.609724
Target:  5'- cUCG-UCGCGUCGCcGGCgaCGAUCG-Cg -3'
miRNA:   3'- -AGCuAGCGCAGCGcCUGa-GCUAGCaG- -5'
16446 3' -55.1 NC_004084.1 + 32410 0.68 0.663716
Target:  5'- uUCGGUCcCGUCGaCGaGCUCGcacUCGUCg -3'
miRNA:   3'- -AGCUAGcGCAGC-GCcUGAGCu--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 2429 0.68 0.685182
Target:  5'- gCGAUCGUGg-GCGGugaaUCGAcCGUCg -3'
miRNA:   3'- aGCUAGCGCagCGCCug--AGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 12440 0.78 0.17984
Target:  5'- aUGAUCGCGUCGaCGuGC-CGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCAGC-GCcUGaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 9237 0.66 0.787861
Target:  5'- cUCGAUCaggGCGUCcaGCGu-CUCGGggUCGUCg -3'
miRNA:   3'- -AGCUAG---CGCAG--CGCcuGAGCU--AGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.