miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16446 3' -55.1 NC_004084.1 + 16739 0.69 0.620521
Target:  5'- cCGGUCuGCaUCGCGGcCUCGAUgaCGUUg -3'
miRNA:   3'- aGCUAG-CGcAGCGCCuGAGCUA--GCAG- -5'
16446 3' -55.1 NC_004084.1 + 53923 0.69 0.606487
Target:  5'- cUCGAcauccugcaguuUCGUGUCG-GGcuucgccagcucgaACUCGAUCGUCc -3'
miRNA:   3'- -AGCU------------AGCGCAGCgCC--------------UGAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 45018 0.69 0.598945
Target:  5'- aCGAUCGaGUCGCGGuucaGCUCGAacuggCGcUCg -3'
miRNA:   3'- aGCUAGCgCAGCGCC----UGAGCUa----GC-AG- -5'
16446 3' -55.1 NC_004084.1 + 10505 0.69 0.597868
Target:  5'- -gGAUCGCGcggcaccUCGCGGAg-CGAcCGUCg -3'
miRNA:   3'- agCUAGCGC-------AGCGCCUgaGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 35885 0.69 0.577477
Target:  5'- aUCGGUCGUcuUCGgcCGGAggCGAUCGUCg -3'
miRNA:   3'- -AGCUAGCGc-AGC--GCCUgaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 49343 0.7 0.566805
Target:  5'- gCGAUCGUGUCGaGG---UGAUCGUCg -3'
miRNA:   3'- aGCUAGCGCAGCgCCugaGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 27060 0.7 0.556183
Target:  5'- gUCGAUCGCG-CGauG-CUCGA-CGUCg -3'
miRNA:   3'- -AGCUAGCGCaGCgcCuGAGCUaGCAG- -5'
16446 3' -55.1 NC_004084.1 + 47969 0.7 0.556183
Target:  5'- -gGAUCGCcUCGCGGGCUucCGGgauguuguucUCGUCc -3'
miRNA:   3'- agCUAGCGcAGCGCCUGA--GCU----------AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 50160 0.67 0.695847
Target:  5'- gUCGAggaUGuCGUCaGCGGcgUCGAUCGUCu -3'
miRNA:   3'- -AGCUa--GC-GCAG-CGCCugAGCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 57634 0.67 0.695847
Target:  5'- cUCGAggucgCGCGUCGCcucGACgagcCGAUCGg- -3'
miRNA:   3'- -AGCUa----GCGCAGCGc--CUGa---GCUAGCag -5'
16446 3' -55.1 NC_004084.1 + 35999 0.67 0.704337
Target:  5'- cCGAcCGCGUCGuCGGAgccgagaagcgUGAUCGUCc -3'
miRNA:   3'- aGCUaGCGCAGC-GCCUga---------GCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 9237 0.66 0.787861
Target:  5'- cUCGAUCaggGCGUCcaGCGu-CUCGGggUCGUCg -3'
miRNA:   3'- -AGCUAG---CGCAG--CGCcuGAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 56472 0.66 0.77812
Target:  5'- aUGAUCGCGgggUCGUaGGCcCGGUCGUa -3'
miRNA:   3'- aGCUAGCGC---AGCGcCUGaGCUAGCAg -5'
16446 3' -55.1 NC_004084.1 + 16630 0.66 0.768233
Target:  5'- gUCGAUCGUGaCGCc--CUCG-UCGUCg -3'
miRNA:   3'- -AGCUAGCGCaGCGccuGAGCuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 37918 0.66 0.758211
Target:  5'- gUCGAUCugauguCGUCGUcGGCggGAUCGUCg -3'
miRNA:   3'- -AGCUAGc-----GCAGCGcCUGagCUAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 6166 0.66 0.758211
Target:  5'- gCGAUCGgGcUCcagGUGGAcCUCGAgcUCGUCu -3'
miRNA:   3'- aGCUAGCgC-AG---CGCCU-GAGCU--AGCAG- -5'
16446 3' -55.1 NC_004084.1 + 13914 0.67 0.737805
Target:  5'- gCGAcCGCuUCGCGGAaCUCc-UCGUCa -3'
miRNA:   3'- aGCUaGCGcAGCGCCU-GAGcuAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 46276 0.67 0.706453
Target:  5'- aUCcAUCGCuucGUCGaCGGAgUCGuaGUCGUCg -3'
miRNA:   3'- -AGcUAGCG---CAGC-GCCUgAGC--UAGCAG- -5'
16446 3' -55.1 NC_004084.1 + 49626 0.67 0.706453
Target:  5'- -aGAUCuCGUCGcCGGGCUCcGUCGa- -3'
miRNA:   3'- agCUAGcGCAGC-GCCUGAGcUAGCag -5'
16446 3' -55.1 NC_004084.1 + 16095 0.67 0.706453
Target:  5'- gUCGAUCuCGUCccgaCGGuCgucgCGAUCGUCg -3'
miRNA:   3'- -AGCUAGcGCAGc---GCCuGa---GCUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.