Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16446 | 5' | -56.3 | NC_004084.1 | + | 54567 | 0.66 | 0.722335 |
Target: 5'- gAGGGCGAgcugacucagcaGGACUACcACAccUCGCuuuUCGa -3' miRNA: 3'- -UCCCGCU------------CCUGAUGcUGU--AGCGc--AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 36672 | 0.66 | 0.716061 |
Target: 5'- -cGGCagcaucgauguccagGAGGACUGCGAUgacGUCGCGgaucUCGu -3' miRNA: 3'- ucCCG---------------CUCCUGAUGCUG---UAGCGC----AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 16138 | 0.66 | 0.6907 |
Target: 5'- -cGGUGAuGGACgaacugcGCGuCGUCGCGUCc -3' miRNA: 3'- ucCCGCU-CCUGa------UGCuGUAGCGCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 10598 | 0.66 | 0.6907 |
Target: 5'- cGGGCGAaaGGuucggauacaccGCUGauCGACAacUCGCGUCu -3' miRNA: 3'- uCCCGCU--CC------------UGAU--GCUGU--AGCGCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 21868 | 0.66 | 0.680033 |
Target: 5'- ---uCGAGGACUGCGucauccGCAUCGCGagGa -3' miRNA: 3'- ucccGCUCCUGAUGC------UGUAGCGCagC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 34572 | 0.66 | 0.669322 |
Target: 5'- gAGGGCGcuggcGGcGACUGCcucCAUCGCGaCGg -3' miRNA: 3'- -UCCCGC-----UC-CUGAUGcu-GUAGCGCaGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 43969 | 0.66 | 0.669322 |
Target: 5'- gAGGGCGAGGGa-ACGACGcucuacCGCGa-- -3' miRNA: 3'- -UCCCGCUCCUgaUGCUGUa-----GCGCagc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 42683 | 0.67 | 0.652119 |
Target: 5'- cGGcGCGAGGcugccaGCgaucaccgaugcugACGACccuGUCGCGUCGg -3' miRNA: 3'- uCC-CGCUCC------UGa-------------UGCUG---UAGCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 26292 | 0.67 | 0.637028 |
Target: 5'- --cGCGAGGuCUGuCGACcagAUCGUGUCGu -3' miRNA: 3'- uccCGCUCCuGAU-GCUG---UAGCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 856 | 0.67 | 0.62732 |
Target: 5'- uGGGUGuGGAaagagucagucguCGACGUCGcCGUCGg -3' miRNA: 3'- uCCCGCuCCUgau----------GCUGUAGC-GCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 16928 | 0.67 | 0.626242 |
Target: 5'- cGGGuGCGGuucggcaucggcGGGCgucGCGACGUCGgGUCu -3' miRNA: 3'- -UCC-CGCU------------CCUGa--UGCUGUAGCgCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 49241 | 0.67 | 0.614383 |
Target: 5'- cAGGGCGAuGACUGaagagauCGACGUCcaCGUCa -3' miRNA: 3'- -UCCCGCUcCUGAU-------GCUGUAGc-GCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 20012 | 0.68 | 0.608998 |
Target: 5'- cGGGGaauccgaucggcgcuCGAGGACgACGA--UCGCGUCu -3' miRNA: 3'- -UCCC---------------GCUCCUGaUGCUguAGCGCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 49776 | 0.68 | 0.603618 |
Target: 5'- -cGGCGAGGACUACaGCcucgguguucucgAUCGCGaagUCGu -3' miRNA: 3'- ucCCGCUCCUGAUGcUG-------------UAGCGC---AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 19935 | 0.68 | 0.602542 |
Target: 5'- gAGGGCGAGGAUccguucaacccCGACAcggucUCGCGauccUCGa -3' miRNA: 3'- -UCCCGCUCCUGau---------GCUGU-----AGCGC----AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 36067 | 0.68 | 0.55136 |
Target: 5'- uGGGGauacgaCGAGGACcGCGACGaggUCGcCGUCu -3' miRNA: 3'- -UCCC------GCUCCUGaUGCUGU---AGC-GCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 3640 | 0.69 | 0.545045 |
Target: 5'- gAGGGCGAucaguagcgcuggcgGGGgUugGGCuUgGCGUCGa -3' miRNA: 3'- -UCCCGCU---------------CCUgAugCUGuAgCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 51209 | 0.69 | 0.540848 |
Target: 5'- -uGGCGcGGGCUACugGGCGUggUGCGUCGa -3' miRNA: 3'- ucCCGCuCCUGAUG--CUGUA--GCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 50267 | 0.7 | 0.469504 |
Target: 5'- uGGcGGCGAGGucCU-CGACGUCugccgaccagGCGUCGg -3' miRNA: 3'- -UC-CCGCUCCu-GAuGCUGUAG----------CGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 4023 | 0.7 | 0.45 |
Target: 5'- -aGGCGucGACUggaACGGCgAUCGCGUCa -3' miRNA: 3'- ucCCGCucCUGA---UGCUG-UAGCGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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