Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16446 | 5' | -56.3 | NC_004084.1 | + | 39315 | 1.08 | 0.001093 |
Target: 5'- gAGGGCGAGGACUACGACAUCGCGUCGu -3' miRNA: 3'- -UCCCGCUCCUGAUGCUGUAGCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 11680 | 0.81 | 0.095124 |
Target: 5'- -cGGCGAGGACaGCGACGUCuacacgGCGUCGg -3' miRNA: 3'- ucCCGCUCCUGaUGCUGUAG------CGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 5353 | 0.8 | 0.112355 |
Target: 5'- gGGcGGCGAGGACUGgGACGaucUCGaCGUCGa -3' miRNA: 3'- -UC-CCGCUCCUGAUgCUGU---AGC-GCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 43663 | 0.71 | 0.406907 |
Target: 5'- cGGGCGGGccuaccgcgccgaguGcCUGCGACGgacgggCGCGUCGa -3' miRNA: 3'- uCCCGCUC---------------CuGAUGCUGUa-----GCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 52641 | 0.71 | 0.385475 |
Target: 5'- cAGGGUGAGugccucGGCUGCGGCGagacggagaUCGuCGUCGa -3' miRNA: 3'- -UCCCGCUC------CUGAUGCUGU---------AGC-GCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 326 | 0.71 | 0.385475 |
Target: 5'- aGGGGCGcggcgaccAGGACggcaACGACAaCGcCGUCGa -3' miRNA: 3'- -UCCCGC--------UCCUGa---UGCUGUaGC-GCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 4023 | 0.7 | 0.45 |
Target: 5'- -aGGCGucGACUggaACGGCgAUCGCGUCa -3' miRNA: 3'- ucCCGCucCUGA---UGCUG-UAGCGCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 50267 | 0.7 | 0.469504 |
Target: 5'- uGGcGGCGAGGucCU-CGACGUCugccgaccagGCGUCGg -3' miRNA: 3'- -UC-CCGCUCCu-GAuGCUGUAG----------CGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 21760 | 0.7 | 0.45 |
Target: 5'- cGGuuccaCGGGGAUcgGCGGCAUCGaCGUCGg -3' miRNA: 3'- uCCc----GCUCCUGa-UGCUGUAGC-GCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 51209 | 0.69 | 0.540848 |
Target: 5'- -uGGCGcGGGCUACugGGCGUggUGCGUCGa -3' miRNA: 3'- ucCCGCuCCUGAUG--CUGUA--GCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 3640 | 0.69 | 0.545045 |
Target: 5'- gAGGGCGAucaguagcgcuggcgGGGgUugGGCuUgGCGUCGa -3' miRNA: 3'- -UCCCGCU---------------CCUgAugCUGuAgCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 20012 | 0.68 | 0.608998 |
Target: 5'- cGGGGaauccgaucggcgcuCGAGGACgACGA--UCGCGUCu -3' miRNA: 3'- -UCCC---------------GCUCCUGaUGCUguAGCGCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 19935 | 0.68 | 0.602542 |
Target: 5'- gAGGGCGAGGAUccguucaacccCGACAcggucUCGCGauccUCGa -3' miRNA: 3'- -UCCCGCUCCUGau---------GCUGU-----AGCGC----AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 36067 | 0.68 | 0.55136 |
Target: 5'- uGGGGauacgaCGAGGACcGCGACGaggUCGcCGUCu -3' miRNA: 3'- -UCCC------GCUCCUGaUGCUGU---AGC-GCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 49776 | 0.68 | 0.603618 |
Target: 5'- -cGGCGAGGACUACaGCcucgguguucucgAUCGCGaagUCGu -3' miRNA: 3'- ucCCGCUCCUGAUGcUG-------------UAGCGC---AGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 42683 | 0.67 | 0.652119 |
Target: 5'- cGGcGCGAGGcugccaGCgaucaccgaugcugACGACccuGUCGCGUCGg -3' miRNA: 3'- uCC-CGCUCC------UGa-------------UGCUG---UAGCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 16928 | 0.67 | 0.626242 |
Target: 5'- cGGGuGCGGuucggcaucggcGGGCgucGCGACGUCGgGUCu -3' miRNA: 3'- -UCC-CGCU------------CCUGa--UGCUGUAGCgCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 26292 | 0.67 | 0.637028 |
Target: 5'- --cGCGAGGuCUGuCGACcagAUCGUGUCGu -3' miRNA: 3'- uccCGCUCCuGAU-GCUG---UAGCGCAGC- -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 49241 | 0.67 | 0.614383 |
Target: 5'- cAGGGCGAuGACUGaagagauCGACGUCcaCGUCa -3' miRNA: 3'- -UCCCGCUcCUGAU-------GCUGUAGc-GCAGc -5' |
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16446 | 5' | -56.3 | NC_004084.1 | + | 856 | 0.67 | 0.62732 |
Target: 5'- uGGGUGuGGAaagagucagucguCGACGUCGcCGUCGg -3' miRNA: 3'- uCCCGCuCCUgau----------GCUGUAGC-GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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