miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16447 3' -55.9 NC_004084.1 + 56614 0.66 0.746343
Target:  5'- cGCCGG-UCGGCGAgUUCGccggaucguGGCucagaacgaCCACCu -3'
miRNA:   3'- -CGGUUgAGCCGCUgAAGC---------UCG---------GGUGG- -5'
16447 3' -55.9 NC_004084.1 + 36628 0.66 0.746343
Target:  5'- cGCCAGgugaUCGGUGACggccccgacgUCGAugCCGCCg -3'
miRNA:   3'- -CGGUUg---AGCCGCUGa---------AGCUcgGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 36243 0.66 0.746343
Target:  5'- cGCCuAC-CGGguCGACguccUCGAGUgCGCCg -3'
miRNA:   3'- -CGGuUGaGCC--GCUGa---AGCUCGgGUGG- -5'
16447 3' -55.9 NC_004084.1 + 42671 0.66 0.746343
Target:  5'- aGCCugaauACUCGGCG----CGAGgCUGCCa -3'
miRNA:   3'- -CGGu----UGAGCCGCugaaGCUCgGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 33210 0.66 0.746343
Target:  5'- aGCCGAagacagaGGCGGCcgagCGGGCCguCCc -3'
miRNA:   3'- -CGGUUgag----CCGCUGaa--GCUCGGguGG- -5'
16447 3' -55.9 NC_004084.1 + 29533 0.66 0.74532
Target:  5'- cGCCAcCcgCGGCGagaucucGCUgCGGaacGCCCACCc -3'
miRNA:   3'- -CGGUuGa-GCCGC-------UGAaGCU---CGGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 14634 0.66 0.736058
Target:  5'- cGCCgGACUcuccgcCGGCGAgCgcccagUCGAuGCCCGCg -3'
miRNA:   3'- -CGG-UUGA------GCCGCU-Ga-----AGCU-CGGGUGg -5'
16447 3' -55.9 NC_004084.1 + 5805 0.66 0.736058
Target:  5'- uCCGACgccgGGCGugUcgacugccUCGA-CCCACCg -3'
miRNA:   3'- cGGUUGag--CCGCugA--------AGCUcGGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 9602 0.66 0.735024
Target:  5'- uUCGGCUCGuacgugcGCGuCUUCGAGCgaucaaCGCCg -3'
miRNA:   3'- cGGUUGAGC-------CGCuGAAGCUCGg-----GUGG- -5'
16447 3' -55.9 NC_004084.1 + 44140 0.66 0.725672
Target:  5'- aGCC-GCUC-GCGACgaCGAGgaccUCCACCu -3'
miRNA:   3'- -CGGuUGAGcCGCUGaaGCUC----GGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 34927 0.66 0.725672
Target:  5'- uCCaAGCUgUGGaCGACUcgcugaUCGAGUCCAUCg -3'
miRNA:   3'- cGG-UUGA-GCC-GCUGA------AGCUCGGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 27146 0.66 0.725672
Target:  5'- -gCGAC-CGGCcACgUUCGAGCUCgACCg -3'
miRNA:   3'- cgGUUGaGCCGcUG-AAGCUCGGG-UGG- -5'
16447 3' -55.9 NC_004084.1 + 41183 0.66 0.725672
Target:  5'- gGUCAGCUgGGaCGAacaCGAcGCCCGCg -3'
miRNA:   3'- -CGGUUGAgCC-GCUgaaGCU-CGGGUGg -5'
16447 3' -55.9 NC_004084.1 + 53318 0.66 0.721492
Target:  5'- gGCCAGCU-GGCGGCccgccugggcaGAccGCUCACCg -3'
miRNA:   3'- -CGGUUGAgCCGCUGaag--------CU--CGGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 36901 0.66 0.715196
Target:  5'- gGCgAACUCGGCGGCgaacguUUCGAaaUCGCg -3'
miRNA:   3'- -CGgUUGAGCCGCUG------AAGCUcgGGUGg -5'
16447 3' -55.9 NC_004084.1 + 48723 0.66 0.715196
Target:  5'- gGCCAACUCaccGCGGuCUccggCGGG-CCACCc -3'
miRNA:   3'- -CGGUUGAGc--CGCU-GAa---GCUCgGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 17874 0.66 0.715196
Target:  5'- uCgGACUCuGGUGACcuUUCGAGCUCGuCUg -3'
miRNA:   3'- cGgUUGAG-CCGCUG--AAGCUCGGGU-GG- -5'
16447 3' -55.9 NC_004084.1 + 47319 0.66 0.70464
Target:  5'- aGCC-GCgaaCGGCGAUcUCGucGCCgACCu -3'
miRNA:   3'- -CGGuUGa--GCCGCUGaAGCu-CGGgUGG- -5'
16447 3' -55.9 NC_004084.1 + 55149 0.66 0.70464
Target:  5'- aCCGACUUcGUGAUgucggaguaGAGCCCGCUg -3'
miRNA:   3'- cGGUUGAGcCGCUGaag------CUCGGGUGG- -5'
16447 3' -55.9 NC_004084.1 + 53469 0.66 0.703581
Target:  5'- aGCCAcuGCUCGauuucguccucgaGCGGCUg-GAGCCCcUCg -3'
miRNA:   3'- -CGGU--UGAGC-------------CGCUGAagCUCGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.