miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16447 5' -57.2 NC_004084.1 + 21535 0.66 0.649158
Target:  5'- -gGAUGGCGaUCGcaucuUCCGUCGGCu- -3'
miRNA:   3'- uaCUACCGCgAGCuc---AGGUAGCCGcc -5'
16447 5' -57.2 NC_004084.1 + 6899 0.66 0.649158
Target:  5'- -cGAaaUGGCGCUCGAGUCgGaCGuaGa -3'
miRNA:   3'- uaCU--ACCGCGAGCUCAGgUaGCcgCc -5'
16447 5' -57.2 NC_004084.1 + 6733 0.67 0.573632
Target:  5'- uUGAUGcCGC-CGAGUCCGaugaCGGCGu -3'
miRNA:   3'- uACUACcGCGaGCUCAGGUa---GCCGCc -5'
16447 5' -57.2 NC_004084.1 + 50087 0.68 0.531304
Target:  5'- -cGAUGaGCGC-CGGGUUCAUCcgagcGCGGu -3'
miRNA:   3'- uaCUAC-CGCGaGCUCAGGUAGc----CGCC- -5'
16447 5' -57.2 NC_004084.1 + 16771 0.68 0.51056
Target:  5'- gGUGAUGGCGCUCcucgcaccGUUCGccgCGGCGu -3'
miRNA:   3'- -UACUACCGCGAGcu------CAGGUa--GCCGCc -5'
16447 5' -57.2 NC_004084.1 + 37415 0.68 0.51056
Target:  5'- gAUGAUGGaCGCUUGGaUCUcgauagCGGCGGc -3'
miRNA:   3'- -UACUACC-GCGAGCUcAGGua----GCCGCC- -5'
16447 5' -57.2 NC_004084.1 + 45368 0.68 0.509532
Target:  5'- -gGA-GGCGCUCGAGUacuucaaaaagaaCgAaCGGCGGa -3'
miRNA:   3'- uaCUaCCGCGAGCUCA-------------GgUaGCCGCC- -5'
16447 5' -57.2 NC_004084.1 + 49746 0.68 0.490161
Target:  5'- -cGA-GGUGCUCGAGUgggucgcccagaCCcUCGGCGa -3'
miRNA:   3'- uaCUaCCGCGAGCUCA------------GGuAGCCGCc -5'
16447 5' -57.2 NC_004084.1 + 27343 0.69 0.440939
Target:  5'- -cGAgGGUcuGCUCuGGUCCAUCGGCa- -3'
miRNA:   3'- uaCUaCCG--CGAGcUCAGGUAGCCGcc -5'
16447 5' -57.2 NC_004084.1 + 18965 0.7 0.37703
Target:  5'- ----cGGCGCUCGcgccAGUCgGcCGGCGGg -3'
miRNA:   3'- uacuaCCGCGAGC----UCAGgUaGCCGCC- -5'
16447 5' -57.2 NC_004084.1 + 43777 0.7 0.368423
Target:  5'- -cGAcugGGCGCUCgccggcggaGAGUCCggCGGCGa -3'
miRNA:   3'- uaCUa--CCGCGAG---------CUCAGGuaGCCGCc -5'
16447 5' -57.2 NC_004084.1 + 7441 0.72 0.319661
Target:  5'- -cGGUGGCGagacCUCgGAGUCCGaCGGCGa -3'
miRNA:   3'- uaCUACCGC----GAG-CUCAGGUaGCCGCc -5'
16447 5' -57.2 NC_004084.1 + 39832 1.07 0.000924
Target:  5'- cAUGAUGGCGCUCGAGUCCAUCGGCGGc -3'
miRNA:   3'- -UACUACCGCGAGCUCAGGUAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.