miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16449 3' -56.4 NC_004084.1 + 12886 0.66 0.678807
Target:  5'- --cGcGCCAACccaucCCGGCGuCCUCGg-- -3'
miRNA:   3'- cuaC-CGGUUGa----GGCCGCuGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 4858 0.66 0.677724
Target:  5'- --cGGCac-CUCCacaagcaGGaCGACCUCGUUCc -3'
miRNA:   3'- cuaCCGguuGAGG-------CC-GCUGGAGCAAG- -5'
16449 3' -56.4 NC_004084.1 + 48700 0.66 0.667955
Target:  5'- --gGGCCucgaaUCCGGCGACgUCcuUUCg -3'
miRNA:   3'- cuaCCGGuug--AGGCCGCUGgAGc-AAG- -5'
16449 3' -56.4 NC_004084.1 + 11011 0.66 0.661427
Target:  5'- --gGaGCCGACugagucagucgaguaUCCGGCGAUCgUGUUCg -3'
miRNA:   3'- cuaC-CGGUUG---------------AGGCCGCUGGaGCAAG- -5'
16449 3' -56.4 NC_004084.1 + 26434 0.66 0.65707
Target:  5'- --aGGCCcGCUCUGGCGGCUa----- -3'
miRNA:   3'- cuaCCGGuUGAGGCCGCUGGagcaag -5'
16449 3' -56.4 NC_004084.1 + 56281 0.66 0.646161
Target:  5'- --cGGUCG--UCUGGUGACCUCGg-- -3'
miRNA:   3'- cuaCCGGUugAGGCCGCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 58084 0.67 0.6134
Target:  5'- -cUGGCuCAACgacgagUUCGGCGGCCUCa--- -3'
miRNA:   3'- cuACCG-GUUG------AGGCCGCUGGAGcaag -5'
16449 3' -56.4 NC_004084.1 + 38443 0.67 0.6134
Target:  5'- --gGGUCGGCcCCuGCGGCCUCGa-- -3'
miRNA:   3'- cuaCCGGUUGaGGcCGCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 22974 0.68 0.548538
Target:  5'- --aGGCCGACcgagUCCuGGuCGACCUCGc-- -3'
miRNA:   3'- cuaCCGGUUG----AGG-CC-GCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 52820 0.68 0.513749
Target:  5'- cGAUGGCUGaccaagagauGCUCUcggcguucggcgcuGGCGACCUCGa-- -3'
miRNA:   3'- -CUACCGGU----------UGAGG--------------CCGCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 15632 0.68 0.506482
Target:  5'- cGAUGGaagAACUCCGGC-AUCUCGgcgUCg -3'
miRNA:   3'- -CUACCgg-UUGAGGCCGcUGGAGCa--AG- -5'
16449 3' -56.4 NC_004084.1 + 1625 0.68 0.505448
Target:  5'- aGAUGGCCGAUcaccgcuUCUGGCGGgaguaCUCGcUCg -3'
miRNA:   3'- -CUACCGGUUG-------AGGCCGCUg----GAGCaAG- -5'
16449 3' -56.4 NC_004084.1 + 17574 0.69 0.465863
Target:  5'- --cGGCCAG-UUCGGgGACCUCGa-- -3'
miRNA:   3'- cuaCCGGUUgAGGCCgCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 44226 0.69 0.465863
Target:  5'- gGAUGGCCGACggCUGG-GAgCUCGUc- -3'
miRNA:   3'- -CUACCGGUUGa-GGCCgCUgGAGCAag -5'
16449 3' -56.4 NC_004084.1 + 25956 0.7 0.450093
Target:  5'- --aGGCCAucauCUCauCGGCuuccccaucgaccucGACCUCGUUCg -3'
miRNA:   3'- cuaCCGGUu---GAG--GCCG---------------CUGGAGCAAG- -5'
16449 3' -56.4 NC_004084.1 + 8126 0.7 0.446196
Target:  5'- aGUGGUCGuuACUCgGGUaGCCUCGUUUc -3'
miRNA:   3'- cUACCGGU--UGAGgCCGcUGGAGCAAG- -5'
16449 3' -56.4 NC_004084.1 + 50909 0.7 0.427
Target:  5'- cGAUGGcCCAGCagCGGauCGGCCUCGacgUCg -3'
miRNA:   3'- -CUACC-GGUUGagGCC--GCUGGAGCa--AG- -5'
16449 3' -56.4 NC_004084.1 + 23088 0.71 0.390125
Target:  5'- --aGGUgGACgUCGGCGACCUCGg-- -3'
miRNA:   3'- cuaCCGgUUGaGGCCGCUGGAGCaag -5'
16449 3' -56.4 NC_004084.1 + 22316 0.72 0.322901
Target:  5'- cGggGGCCGugccACUCguaggagaCGGCGACCUCGUc- -3'
miRNA:   3'- -CuaCCGGU----UGAG--------GCCGCUGGAGCAag -5'
16449 3' -56.4 NC_004084.1 + 28602 0.73 0.285473
Target:  5'- aGUGGUCGuCUUCGGUGAUCUCGUa- -3'
miRNA:   3'- cUACCGGUuGAGGCCGCUGGAGCAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.