Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16449 | 3' | -56.4 | NC_004084.1 | + | 50909 | 0.7 | 0.427 |
Target: 5'- cGAUGGcCCAGCagCGGauCGGCCUCGacgUCg -3' miRNA: 3'- -CUACC-GGUUGagGCC--GCUGGAGCa--AG- -5' |
|||||||
16449 | 3' | -56.4 | NC_004084.1 | + | 52820 | 0.68 | 0.513749 |
Target: 5'- cGAUGGCUGaccaagagauGCUCUcggcguucggcgcuGGCGACCUCGa-- -3' miRNA: 3'- -CUACCGGU----------UGAGG--------------CCGCUGGAGCaag -5' |
|||||||
16449 | 3' | -56.4 | NC_004084.1 | + | 56281 | 0.66 | 0.646161 |
Target: 5'- --cGGUCG--UCUGGUGACCUCGg-- -3' miRNA: 3'- cuaCCGGUugAGGCCGCUGGAGCaag -5' |
|||||||
16449 | 3' | -56.4 | NC_004084.1 | + | 58084 | 0.67 | 0.6134 |
Target: 5'- -cUGGCuCAACgacgagUUCGGCGGCCUCa--- -3' miRNA: 3'- cuACCG-GUUG------AGGCCGCUGGAGcaag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home