Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16449 | 5' | -57.4 | NC_004084.1 | + | 17327 | 0.68 | 0.493167 |
Target: 5'- --cGAuCGAGGAGAucaaCGcCGGAGGCgagGGCu -3' miRNA: 3'- gacCU-GCUCCUCU----GC-GCCUUCGa--CCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 41402 | 0.69 | 0.46336 |
Target: 5'- -aGGGCGAGGAGGcCG-GGAAGgUaGCg -3' miRNA: 3'- gaCCUGCUCCUCU-GCgCCUUCgAcCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 28286 | 0.69 | 0.46336 |
Target: 5'- gUGGACG-GGAGucuCGCGaucGggGC-GGCg -3' miRNA: 3'- gACCUGCuCCUCu--GCGC---CuuCGaCCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 9687 | 0.69 | 0.425144 |
Target: 5'- -gGGugGcccgccGGAGAcCGCGGuGAGUUGGCc -3' miRNA: 3'- gaCCugCu-----CCUCU-GCGCC-UUCGACCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 40917 | 0.7 | 0.415887 |
Target: 5'- cCUGGACGAGGAG-CaGCuaccGGGCUGGa -3' miRNA: 3'- -GACCUGCUCCUCuG-CGcc--UUCGACCg -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 6425 | 0.7 | 0.404039 |
Target: 5'- -cGGAUGAcGAGACGUggugcgcccgaggaGGguGCUGGCg -3' miRNA: 3'- gaCCUGCUcCUCUGCG--------------CCuuCGACCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 9851 | 0.7 | 0.397748 |
Target: 5'- --cGGCGAGGGcggcucACGCGGGAGCccGGCg -3' miRNA: 3'- gacCUGCUCCUc-----UGCGCCUUCGa-CCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 15270 | 0.7 | 0.397748 |
Target: 5'- -aGGAgGAGGcGGCGgcaauaucCGGcGGCUGGCg -3' miRNA: 3'- gaCCUgCUCCuCUGC--------GCCuUCGACCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 41484 | 0.7 | 0.380125 |
Target: 5'- -cGGGCGAgaacGGAagacGAuCGCGGAugccGCUGGCg -3' miRNA: 3'- gaCCUGCU----CCU----CU-GCGCCUu---CGACCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 29643 | 0.71 | 0.363032 |
Target: 5'- -cGGACGucGAcgaccGCGCGGAcAGCUGGUa -3' miRNA: 3'- gaCCUGCucCUc----UGCGCCU-UCGACCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 17283 | 0.72 | 0.28577 |
Target: 5'- -cGGugGAGGcGGugGCGGcGGUggcGGCg -3' miRNA: 3'- gaCCugCUCC-UCugCGCCuUCGa--CCG- -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 4069 | 0.73 | 0.271967 |
Target: 5'- -gGGcGCGAGGAGAUGCGGAAcCUGa- -3' miRNA: 3'- gaCC-UGCUCCUCUGCGCCUUcGACcg -5' |
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16449 | 5' | -57.4 | NC_004084.1 | + | 40217 | 1.1 | 0.000569 |
Target: 5'- gCUGGACGAGGAGACGCGGAAGCUGGCc -3' miRNA: 3'- -GACCUGCUCCUCUGCGCCUUCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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