miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1645 3' -56.8 NC_001347.2 + 194461 0.66 0.962166
Target:  5'- aCGUgCGCGcCACGGCgggucguugGCUcccgCUGUgCUGGc -3'
miRNA:   3'- gGCA-GCGC-GUGCCG---------CGAa---GACA-GACC- -5'
1645 3' -56.8 NC_001347.2 + 78687 0.66 0.962166
Target:  5'- gCG-CGCGaCGCGGCGCccUUCcGUCcgcUGGc -3'
miRNA:   3'- gGCaGCGC-GUGCCGCG--AAGaCAG---ACC- -5'
1645 3' -56.8 NC_001347.2 + 115036 0.66 0.958785
Target:  5'- aCCGUCGCGUccgacgcgACGGUGUUUUcgccGUC-GGu -3'
miRNA:   3'- -GGCAGCGCG--------UGCCGCGAAGa---CAGaCC- -5'
1645 3' -56.8 NC_001347.2 + 113465 0.66 0.958785
Target:  5'- cCCGUCaCGguCGGcCGCcgUgagGUCUGGa -3'
miRNA:   3'- -GGCAGcGCguGCC-GCGaaGa--CAGACC- -5'
1645 3' -56.8 NC_001347.2 + 142433 0.66 0.958785
Target:  5'- gCGUCG-GCGCGGCGUccggcGUCgGGg -3'
miRNA:   3'- gGCAGCgCGUGCCGCGaaga-CAGaCC- -5'
1645 3' -56.8 NC_001347.2 + 178087 0.66 0.955202
Target:  5'- gCGUUGgGCAaggUGGCGCUUCgcuacgcgGUgaGGa -3'
miRNA:   3'- gGCAGCgCGU---GCCGCGAAGa-------CAgaCC- -5'
1645 3' -56.8 NC_001347.2 + 136349 0.66 0.955202
Target:  5'- aCCGgcgcaUGCGCACGGCGCacaUCUag-UGGa -3'
miRNA:   3'- -GGCa----GCGCGUGCCGCGa--AGAcagACC- -5'
1645 3' -56.8 NC_001347.2 + 221407 0.66 0.954833
Target:  5'- cCCGUCGguuCGaucaACGGgGaguuaucUUUCUGUCUGGa -3'
miRNA:   3'- -GGCAGC---GCg---UGCCgC-------GAAGACAGACC- -5'
1645 3' -56.8 NC_001347.2 + 39981 0.66 0.945759
Target:  5'- gCGgCGCGCACGGCGaaaagaagacgCgUGUCUGu -3'
miRNA:   3'- gGCaGCGCGUGCCGCgaa--------G-ACAGACc -5'
1645 3' -56.8 NC_001347.2 + 39213 0.66 0.943209
Target:  5'- gCCG-CGCGCcacACGGCGCccaUGgcCUGGu -3'
miRNA:   3'- -GGCaGCGCG---UGCCGCGaagACa-GACC- -5'
1645 3' -56.8 NC_001347.2 + 195177 0.66 0.943209
Target:  5'- uUCGUUGCcCACGGCGUUUUUGcuucucgccgUUGGa -3'
miRNA:   3'- -GGCAGCGcGUGCCGCGAAGACa---------GACC- -5'
1645 3' -56.8 NC_001347.2 + 82446 0.67 0.934151
Target:  5'- aCG-CGCGCcaacACGGCGCUacgCUGcUCUaGGc -3'
miRNA:   3'- gGCaGCGCG----UGCCGCGAa--GAC-AGA-CC- -5'
1645 3' -56.8 NC_001347.2 + 129499 0.67 0.934151
Target:  5'- gCGUCuGCaGCGCGGCGCcgcCUcGUCgGGu -3'
miRNA:   3'- gGCAG-CG-CGUGCCGCGaa-GA-CAGaCC- -5'
1645 3' -56.8 NC_001347.2 + 88666 0.67 0.929298
Target:  5'- --uUCGCGCAuccacuggcgcCGGCGCgccCUG-CUGGg -3'
miRNA:   3'- ggcAGCGCGU-----------GCCGCGaa-GACaGACC- -5'
1645 3' -56.8 NC_001347.2 + 126080 0.67 0.9278
Target:  5'- gCCG-CGCGcCAgcccaucccccucuCGGCGCUcaUCgccaGUCUGGa -3'
miRNA:   3'- -GGCaGCGC-GU--------------GCCGCGA--AGa---CAGACC- -5'
1645 3' -56.8 NC_001347.2 + 210184 0.67 0.924228
Target:  5'- gCGUCGUGCcugACGGUGCUuUCUGcacuaUgUGGu -3'
miRNA:   3'- gGCAGCGCG---UGCCGCGA-AGAC-----AgACC- -5'
1645 3' -56.8 NC_001347.2 + 2402 0.68 0.901792
Target:  5'- gCCGagGcCGCGCGGCGgCUgCUGcccgagCUGGa -3'
miRNA:   3'- -GGCagC-GCGUGCCGC-GAaGACa-----GACC- -5'
1645 3' -56.8 NC_001347.2 + 21629 0.68 0.885392
Target:  5'- gCCGUCGCcgcaggccuuugucgGCGCGGCuCUUCUcgccCUGGc -3'
miRNA:   3'- -GGCAGCG---------------CGUGCCGcGAAGAca--GACC- -5'
1645 3' -56.8 NC_001347.2 + 38368 0.69 0.869035
Target:  5'- cCCGcuaUCGCGCACGGCGCgUCcccgCcGGc -3'
miRNA:   3'- -GGC---AGCGCGUGCCGCGaAGaca-GaCC- -5'
1645 3' -56.8 NC_001347.2 + 73185 0.69 0.861888
Target:  5'- aCGUCGUGCGaGGCGCgcUUUcUCUGGc -3'
miRNA:   3'- gGCAGCGCGUgCCGCGa-AGAcAGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.