Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1645 | 3' | -56.8 | NC_001347.2 | + | 2237 | 0.69 | 0.861888 |
Target: 5'- aCCGUgcCGCGCGCcaugcugguGGUGCUgCUGgacgagCUGGg -3' miRNA: 3'- -GGCA--GCGCGUG---------CCGCGAaGACa-----GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 127416 | 0.69 | 0.854553 |
Target: 5'- aCGgcuGCGCgACGGCGUcUCcgGUCUGGc -3' miRNA: 3'- gGCag-CGCG-UGCCGCGaAGa-CAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 24480 | 0.69 | 0.854553 |
Target: 5'- -aGUCGCGUcCGG-GCUUUccuugucacguUGUCUGGg -3' miRNA: 3'- ggCAGCGCGuGCCgCGAAG-----------ACAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 93657 | 0.69 | 0.847795 |
Target: 5'- cUCGUCGCGguCGuGCGgaUCgguggcguacaugagGUCUGGa -3' miRNA: 3'- -GGCAGCGCguGC-CGCgaAGa--------------CAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 106931 | 0.7 | 0.831476 |
Target: 5'- gCCG-CGCaucaCACGGCGUUacacgaCUGUCUGGc -3' miRNA: 3'- -GGCaGCGc---GUGCCGCGAa-----GACAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 1203 | 0.7 | 0.81526 |
Target: 5'- gUGUgGCGCGCGGCGUUUUUGg---- -3' miRNA: 3'- gGCAgCGCGUGCCGCGAAGACagacc -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 184837 | 0.7 | 0.81526 |
Target: 5'- cUCGUCGCGCGCGuaGCUcaccaccUUGUcCUGGu -3' miRNA: 3'- -GGCAGCGCGUGCcgCGAa------GACA-GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 193818 | 0.7 | 0.81526 |
Target: 5'- -aGUgcUGCGCACGGCGCgcga-UCUGGg -3' miRNA: 3'- ggCA--GCGCGUGCCGCGaagacAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 39682 | 0.7 | 0.806922 |
Target: 5'- gCGaCGUGCACGGCGCg--UG-CUGGc -3' miRNA: 3'- gGCaGCGCGUGCCGCGaagACaGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 127830 | 0.7 | 0.806922 |
Target: 5'- gCCGUgGCGCA-GGUGCUcaaucacgccgUCUGUCUc- -3' miRNA: 3'- -GGCAgCGCGUgCCGCGA-----------AGACAGAcc -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 38716 | 0.7 | 0.798441 |
Target: 5'- gCCGUCGC-CuccuCGGCGCgcagcaacgUCUGUC-GGa -3' miRNA: 3'- -GGCAGCGcGu---GCCGCGa--------AGACAGaCC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 174428 | 0.7 | 0.797585 |
Target: 5'- uUCGUCGCgucagcgGCACGGUGCUgcgUCUcagCUGGc -3' miRNA: 3'- -GGCAGCG-------CGUGCCGCGA---AGAca-GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 173995 | 0.71 | 0.744959 |
Target: 5'- aCG-CGCGCACGGCGCg---GUCccgugaUGGa -3' miRNA: 3'- gGCaGCGCGUGCCGCGaagaCAG------ACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 169127 | 0.72 | 0.726332 |
Target: 5'- gCCG-CGCGCGCcGCGCUgcaguggCUGgacCUGGg -3' miRNA: 3'- -GGCaGCGCGUGcCGCGAa------GACa--GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 23364 | 0.72 | 0.714062 |
Target: 5'- aCCGUggcCGUGCAgGGCaccugcaccuucuuGC-UCUGUCUGGg -3' miRNA: 3'- -GGCA---GCGCGUgCCG--------------CGaAGACAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 171293 | 0.72 | 0.697857 |
Target: 5'- aCCGUgCGCGUgaGCaGCGCUacucgCUGUUUGGg -3' miRNA: 3'- -GGCA-GCGCG--UGcCGCGAa----GACAGACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 2354 | 0.72 | 0.697857 |
Target: 5'- gCGggCGUGCugGGCGCg-CUGgcgCUGGg -3' miRNA: 3'- gGCa-GCGCGugCCGCGaaGACa--GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 93432 | 0.73 | 0.649502 |
Target: 5'- cUCGUCGCGCACGGCGCgaaUCa------ -3' miRNA: 3'- -GGCAGCGCGUGCCGCGa--AGacagacc -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 107773 | 0.75 | 0.566056 |
Target: 5'- gCCGUCGCaacacagcucucgguGCugGGCGCUUCcaucgcgCUGGa -3' miRNA: 3'- -GGCAGCG---------------CGugCCGCGAAGaca----GACC- -5' |
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1645 | 3' | -56.8 | NC_001347.2 | + | 41327 | 0.75 | 0.521511 |
Target: 5'- gCCGcggcacaggcuuUCGCGCacacgauuccgaggACGGCGUcUCUGUCUGGc -3' miRNA: 3'- -GGC------------AGCGCG--------------UGCCGCGaAGACAGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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