miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1645 5' -56.5 NC_001347.2 + 185488 0.66 0.958465
Target:  5'- gGCgCGCaGggGcUCCGACGUG-GCGu -3'
miRNA:   3'- aCG-GUGcCuuCaAGGCUGCGCuCGCu -5'
1645 5' -56.5 NC_001347.2 + 136194 0.66 0.958465
Target:  5'- cUGCCGCGGAcuGcgCCGGgGgGcGGCGGg -3'
miRNA:   3'- -ACGGUGCCUu-CaaGGCUgCgC-UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 162160 0.66 0.958465
Target:  5'- gGCUGCuGGAAGUcggCgGGCGgGGGCGu -3'
miRNA:   3'- aCGGUG-CCUUCAa--GgCUGCgCUCGCu -5'
1645 5' -56.5 NC_001347.2 + 88356 0.66 0.958465
Target:  5'- cGCCGCuGGcGGcgCUGcCGCGAGaCGAc -3'
miRNA:   3'- aCGGUG-CCuUCaaGGCuGCGCUC-GCU- -5'
1645 5' -56.5 NC_001347.2 + 188614 0.66 0.958465
Target:  5'- aGCC-CGGGAGggUCCGucgggacaGCGCGuGgGAc -3'
miRNA:   3'- aCGGuGCCUUCa-AGGC--------UGCGCuCgCU- -5'
1645 5' -56.5 NC_001347.2 + 198979 0.66 0.954814
Target:  5'- aGCCGCGGcgaUUCgGGCGUGccGCGAu -3'
miRNA:   3'- aCGGUGCCuucAAGgCUGCGCu-CGCU- -5'
1645 5' -56.5 NC_001347.2 + 135195 0.66 0.954437
Target:  5'- aGCCugGuGggG-UCCGAgGCGccgaccccggcugGGCGGc -3'
miRNA:   3'- aCGGugC-CuuCaAGGCUgCGC-------------UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 63065 0.66 0.950952
Target:  5'- gGUgGCGGAGGacugCCGGCGgGuGUGGg -3'
miRNA:   3'- aCGgUGCCUUCaa--GGCUGCgCuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 154861 0.66 0.950952
Target:  5'- gGCCGCcGAGGUUUCGAgGCcGGCc- -3'
miRNA:   3'- aCGGUGcCUUCAAGGCUgCGcUCGcu -5'
1645 5' -56.5 NC_001347.2 + 1241 0.66 0.946875
Target:  5'- cGCCAUGcGcAAGUggucgcagCgCGACGCGGGCa- -3'
miRNA:   3'- aCGGUGC-C-UUCAa-------G-GCUGCGCUCGcu -5'
1645 5' -56.5 NC_001347.2 + 143163 0.66 0.942581
Target:  5'- cGCCAgacCGGAcgacAGcgUCuCGuACGUGAGCGAg -3'
miRNA:   3'- aCGGU---GCCU----UCa-AG-GC-UGCGCUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 4190 0.66 0.938067
Target:  5'- aGUCACGGAaaAGacugCCGACGcCGuGCGc -3'
miRNA:   3'- aCGGUGCCU--UCaa--GGCUGC-GCuCGCu -5'
1645 5' -56.5 NC_001347.2 + 116181 0.66 0.938067
Target:  5'- aUGCCGauGAguAGaUCCGAgGCGGcGCGAu -3'
miRNA:   3'- -ACGGUgcCU--UCaAGGCUgCGCU-CGCU- -5'
1645 5' -56.5 NC_001347.2 + 131869 0.66 0.938067
Target:  5'- gUGCgACGGAGGgccCCGACGUccccucucccgGAGgGGg -3'
miRNA:   3'- -ACGgUGCCUUCaa-GGCUGCG-----------CUCgCU- -5'
1645 5' -56.5 NC_001347.2 + 198353 0.66 0.938067
Target:  5'- aUGUCGCGGGugaugAGuUUCUGGCGCaGGUGGg -3'
miRNA:   3'- -ACGGUGCCU-----UC-AAGGCUGCGcUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 136088 0.67 0.928376
Target:  5'- gGcCCGCGGAcGgaCCGGCGcCGGGCc- -3'
miRNA:   3'- aC-GGUGCCUuCaaGGCUGC-GCUCGcu -5'
1645 5' -56.5 NC_001347.2 + 21427 0.67 0.923196
Target:  5'- cGCCAcCGGugg--CCGAgcuaUGCGAGCGGg -3'
miRNA:   3'- aCGGU-GCCuucaaGGCU----GCGCUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 979 0.67 0.917794
Target:  5'- gUGCCgAUGGGAGcgCCGucacaGCGGGCa- -3'
miRNA:   3'- -ACGG-UGCCUUCaaGGCug---CGCUCGcu -5'
1645 5' -56.5 NC_001347.2 + 126656 0.67 0.917794
Target:  5'- cGCgCGCGGuugcucGAGUaCCGGCGCGuGGUGGc -3'
miRNA:   3'- aCG-GUGCC------UUCAaGGCUGCGC-UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 172687 0.67 0.912171
Target:  5'- cGCCucuCGGAGccgCCGACGCuGGCGc -3'
miRNA:   3'- aCGGu--GCCUUcaaGGCUGCGcUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.