Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1645 | 5' | -56.5 | NC_001347.2 | + | 172687 | 0.67 | 0.912171 |
Target: 5'- cGCCucuCGGAGccgCCGACGCuGGCGc -3' miRNA: 3'- aCGGu--GCCUUcaaGGCUGCGcUCGCu -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 29235 | 0.67 | 0.912171 |
Target: 5'- gGCUacGCGGAucgAGUgCCGACGCcGGUGGa -3' miRNA: 3'- aCGG--UGCCU---UCAaGGCUGCGcUCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 112069 | 0.67 | 0.911597 |
Target: 5'- gGCC-CGGccGUUgccgccucagaacCCGACGCGguAGCGAg -3' miRNA: 3'- aCGGuGCCuuCAA-------------GGCUGCGC--UCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 16382 | 0.67 | 0.907513 |
Target: 5'- cGUCACGGucaugacgCCGACGCGuuggccgccugcguuGGCGAa -3' miRNA: 3'- aCGGUGCCuucaa---GGCUGCGC---------------UCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 168309 | 0.68 | 0.893986 |
Target: 5'- uUGCCGCGGcgcucggUCGACGCGuuguuacuGGCGAu -3' miRNA: 3'- -ACGGUGCCuucaa--GGCUGCGC--------UCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 134354 | 0.68 | 0.880793 |
Target: 5'- gGCCA-GGggGUaCCGAgGCGGugcccGCGAc -3' miRNA: 3'- aCGGUgCCuuCAaGGCUgCGCU-----CGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 169452 | 0.68 | 0.873886 |
Target: 5'- uUGCaCGCGGaAAGUUCgccCGCGAGCGc -3' miRNA: 3'- -ACG-GUGCC-UUCAAGgcuGCGCUCGCu -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 38566 | 0.69 | 0.859472 |
Target: 5'- aGCgACGcGggGUgcggcgCCGACGCGAaCGGc -3' miRNA: 3'- aCGgUGC-CuuCAa-----GGCUGCGCUcGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 140584 | 0.69 | 0.859472 |
Target: 5'- gUGCUgGCGGggGUgguggacgaGACGUGAGCGGg -3' miRNA: 3'- -ACGG-UGCCuuCAagg------CUGCGCUCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 173700 | 0.69 | 0.851976 |
Target: 5'- gGCgGCGGuGGUUCCGguACGCGgaaaaugagcAGCGGu -3' miRNA: 3'- aCGgUGCCuUCAAGGC--UGCGC----------UCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 107421 | 0.69 | 0.836434 |
Target: 5'- cGCCACGc----UCCGGCGCG-GCGGa -3' miRNA: 3'- aCGGUGCcuucaAGGCUGCGCuCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 149073 | 0.69 | 0.836434 |
Target: 5'- gGCUGCGuGAGGUcauugCCaGCGUGGGCGAa -3' miRNA: 3'- aCGGUGC-CUUCAa----GGcUGCGCUCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 142982 | 0.7 | 0.794675 |
Target: 5'- cGCCcgagGCGGAGGagCCGGCgGCG-GCGGu -3' miRNA: 3'- aCGG----UGCCUUCaaGGCUG-CGCuCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 135826 | 0.7 | 0.776963 |
Target: 5'- aGCCgGCGGAGGUcgCCGGgagcaGCGAGgGAu -3' miRNA: 3'- aCGG-UGCCUUCAa-GGCUg----CGCUCgCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 117428 | 0.71 | 0.758768 |
Target: 5'- cGCCACGGAG--UCCGGCG-GAucGCGGc -3' miRNA: 3'- aCGGUGCCUUcaAGGCUGCgCU--CGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 1566 | 0.71 | 0.758768 |
Target: 5'- cGCgaCGCGGAcgaguGGUUUcggcaCGGCGCGGGCGAg -3' miRNA: 3'- aCG--GUGCCU-----UCAAG-----GCUGCGCUCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 41170 | 0.71 | 0.749511 |
Target: 5'- cGCCGCGGcGGUggcgacugggCCGACaGCGcaAGCGAc -3' miRNA: 3'- aCGGUGCCuUCAa---------GGCUG-CGC--UCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 37058 | 0.72 | 0.692239 |
Target: 5'- gGCCGCGGAGGUgcuggcggCCGugGCcuGUGGc -3' miRNA: 3'- aCGGUGCCUUCAa-------GGCugCGcuCGCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 228729 | 0.74 | 0.603683 |
Target: 5'- cGCCGCGGcGGauUUCCG-CGCGGGgGAc -3' miRNA: 3'- aCGGUGCCuUC--AAGGCuGCGCUCgCU- -5' |
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1645 | 5' | -56.5 | NC_001347.2 | + | 99141 | 0.75 | 0.52607 |
Target: 5'- aGCCGCGGcgcgcguacgccGAGacCCGACGCG-GCGAu -3' miRNA: 3'- aCGGUGCC------------UUCaaGGCUGCGCuCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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