miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1645 5' -56.5 NC_001347.2 + 979 0.67 0.917794
Target:  5'- gUGCCgAUGGGAGcgCCGucacaGCGGGCa- -3'
miRNA:   3'- -ACGG-UGCCUUCaaGGCug---CGCUCGcu -5'
1645 5' -56.5 NC_001347.2 + 1241 0.66 0.946875
Target:  5'- cGCCAUGcGcAAGUggucgcagCgCGACGCGGGCa- -3'
miRNA:   3'- aCGGUGC-C-UUCAa-------G-GCUGCGCUCGcu -5'
1645 5' -56.5 NC_001347.2 + 1566 0.71 0.758768
Target:  5'- cGCgaCGCGGAcgaguGGUUUcggcaCGGCGCGGGCGAg -3'
miRNA:   3'- aCG--GUGCCU-----UCAAG-----GCUGCGCUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 4190 0.66 0.938067
Target:  5'- aGUCACGGAaaAGacugCCGACGcCGuGCGc -3'
miRNA:   3'- aCGGUGCCU--UCaa--GGCUGC-GCuCGCu -5'
1645 5' -56.5 NC_001347.2 + 16382 0.67 0.907513
Target:  5'- cGUCACGGucaugacgCCGACGCGuuggccgccugcguuGGCGAa -3'
miRNA:   3'- aCGGUGCCuucaa---GGCUGCGC---------------UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 21427 0.67 0.923196
Target:  5'- cGCCAcCGGugg--CCGAgcuaUGCGAGCGGg -3'
miRNA:   3'- aCGGU-GCCuucaaGGCU----GCGCUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 29235 0.67 0.912171
Target:  5'- gGCUacGCGGAucgAGUgCCGACGCcGGUGGa -3'
miRNA:   3'- aCGG--UGCCU---UCAaGGCUGCGcUCGCU- -5'
1645 5' -56.5 NC_001347.2 + 37058 0.72 0.692239
Target:  5'- gGCCGCGGAGGUgcuggcggCCGugGCcuGUGGc -3'
miRNA:   3'- aCGGUGCCUUCAa-------GGCugCGcuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 38566 0.69 0.859472
Target:  5'- aGCgACGcGggGUgcggcgCCGACGCGAaCGGc -3'
miRNA:   3'- aCGgUGC-CuuCAa-----GGCUGCGCUcGCU- -5'
1645 5' -56.5 NC_001347.2 + 41170 0.71 0.749511
Target:  5'- cGCCGCGGcGGUggcgacugggCCGACaGCGcaAGCGAc -3'
miRNA:   3'- aCGGUGCCuUCAa---------GGCUG-CGC--UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 63065 0.66 0.950952
Target:  5'- gGUgGCGGAGGacugCCGGCGgGuGUGGg -3'
miRNA:   3'- aCGgUGCCUUCaa--GGCUGCgCuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 75397 0.67 0.912171
Target:  5'- cGCUccaaGCGGGAGcggcggCCGugGCG-GCGGc -3'
miRNA:   3'- aCGG----UGCCUUCaa----GGCugCGCuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 88356 0.66 0.958465
Target:  5'- cGCCGCuGGcGGcgCUGcCGCGAGaCGAc -3'
miRNA:   3'- aCGGUG-CCuUCaaGGCuGCGCUC-GCU- -5'
1645 5' -56.5 NC_001347.2 + 99141 0.75 0.52607
Target:  5'- aGCCGCGGcgcgcguacgccGAGacCCGACGCG-GCGAu -3'
miRNA:   3'- aCGGUGCC------------UUCaaGGCUGCGCuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 107421 0.69 0.836434
Target:  5'- cGCCACGc----UCCGGCGCG-GCGGa -3'
miRNA:   3'- aCGGUGCcuucaAGGCUGCGCuCGCU- -5'
1645 5' -56.5 NC_001347.2 + 112069 0.67 0.911597
Target:  5'- gGCC-CGGccGUUgccgccucagaacCCGACGCGguAGCGAg -3'
miRNA:   3'- aCGGuGCCuuCAA-------------GGCUGCGC--UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 116181 0.66 0.938067
Target:  5'- aUGCCGauGAguAGaUCCGAgGCGGcGCGAu -3'
miRNA:   3'- -ACGGUgcCU--UCaAGGCUgCGCU-CGCU- -5'
1645 5' -56.5 NC_001347.2 + 117428 0.71 0.758768
Target:  5'- cGCCACGGAG--UCCGGCG-GAucGCGGc -3'
miRNA:   3'- aCGGUGCCUUcaAGGCUGCgCU--CGCU- -5'
1645 5' -56.5 NC_001347.2 + 126656 0.67 0.917794
Target:  5'- cGCgCGCGGuugcucGAGUaCCGGCGCGuGGUGGc -3'
miRNA:   3'- aCG-GUGCC------UUCAaGGCUGCGC-UCGCU- -5'
1645 5' -56.5 NC_001347.2 + 128903 1.09 0.004307
Target:  5'- gUGCCACGGAAGUUCCGACGCGAGCGAa -3'
miRNA:   3'- -ACGGUGCCUUCAAGGCUGCGCUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.