miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16450 3' -58.2 NC_004084.1 + 22517 0.66 0.620003
Target:  5'- uCAUCCUCGacgacgaucGCCUcCGGCCgaaGACGaCCGa -3'
miRNA:   3'- -GUAGGGGC---------UGGA-GCUGGa--CUGCaGGC- -5'
16450 3' -58.2 NC_004084.1 + 5153 0.66 0.620003
Target:  5'- aCGUCgCCCGGCC-CGAUCUcgucgccgucGACGaCCGc -3'
miRNA:   3'- -GUAG-GGGCUGGaGCUGGA----------CUGCaGGC- -5'
16450 3' -58.2 NC_004084.1 + 33051 0.66 0.609414
Target:  5'- uCAagCCCGACCaaGGCCUGAUugaaguUCCGa -3'
miRNA:   3'- -GUagGGGCUGGagCUGGACUGc-----AGGC- -5'
16450 3' -58.2 NC_004084.1 + 12026 0.66 0.609414
Target:  5'- cCGUCgCCGAUCgucgauUCGACCUGAagggcgucggUGUCCu -3'
miRNA:   3'- -GUAGgGGCUGG------AGCUGGACU----------GCAGGc -5'
16450 3' -58.2 NC_004084.1 + 57647 0.66 0.598843
Target:  5'- gUcgCCUCGACgagccgaUCGGCCUgGugGUCCa -3'
miRNA:   3'- -GuaGGGGCUGg------AGCUGGA-CugCAGGc -5'
16450 3' -58.2 NC_004084.1 + 31982 0.66 0.588299
Target:  5'- aCGUCCUCGugaUCGACCUGGa-UCCGc -3'
miRNA:   3'- -GUAGGGGCuggAGCUGGACUgcAGGC- -5'
16450 3' -58.2 NC_004084.1 + 7136 0.67 0.577789
Target:  5'- gAUCUCCGugUagguguUCGGCCgggGugGUUCGg -3'
miRNA:   3'- gUAGGGGCugG------AGCUGGa--CugCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 8271 0.67 0.577789
Target:  5'- aCAUCCUCGACaaCGACCUcGuCaUCCGg -3'
miRNA:   3'- -GUAGGGGCUGgaGCUGGA-CuGcAGGC- -5'
16450 3' -58.2 NC_004084.1 + 41277 0.67 0.56732
Target:  5'- uCGUCCCCaucagugaACCgcCGACCUcaucGACGUCCu -3'
miRNA:   3'- -GUAGGGGc-------UGGa-GCUGGA----CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 35993 0.67 0.545503
Target:  5'- uCGUCUCCGACCgcgUCGucggagccgagaaGCgUGAuCGUCCGg -3'
miRNA:   3'- -GUAGGGGCUGG---AGC-------------UGgACU-GCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 50276 0.67 0.536234
Target:  5'- gGUCCUCGACgUcugcCGACCaGGCGUCgGu -3'
miRNA:   3'- gUAGGGGCUGgA----GCUGGaCUGCAGgC- -5'
16450 3' -58.2 NC_004084.1 + 9220 0.67 0.536234
Target:  5'- cCGUCCUggaUGACCugcUCGAUCagGGCGUCCa -3'
miRNA:   3'- -GUAGGG---GCUGG---AGCUGGa-CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 49508 0.67 0.536234
Target:  5'- uCGUCUUCGGCUUCcGCCUcuuCGUCCGa -3'
miRNA:   3'- -GUAGGGGCUGGAGcUGGAcu-GCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 35940 0.67 0.536234
Target:  5'- uGUCCCCGGCgUCG-CCggggucGGCGgCCGu -3'
miRNA:   3'- gUAGGGGCUGgAGCuGGa-----CUGCaGGC- -5'
16450 3' -58.2 NC_004084.1 + 27477 0.67 0.524981
Target:  5'- gCGUCCUCGAgCUCGACgUcgacgaggcgaucGACGUCUu -3'
miRNA:   3'- -GUAGGGGCUgGAGCUGgA-------------CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 36655 0.67 0.521928
Target:  5'- -cUCCUCGAUCUCGACaucggcagcaucGAUGUCCa -3'
miRNA:   3'- guAGGGGCUGGAGCUGga----------CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 8538 0.68 0.515842
Target:  5'- --aCCgCGACCUCGAgaUcGACGUCCu -3'
miRNA:   3'- guaGGgGCUGGAGCUggA-CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 51717 0.68 0.51483
Target:  5'- aCAUCgCCGGCgUUGACCUcgagaugGACGUCg- -3'
miRNA:   3'- -GUAGgGGCUGgAGCUGGA-------CUGCAGgc -5'
16450 3' -58.2 NC_004084.1 + 19925 0.68 0.505763
Target:  5'- gAUCaggCCGAUCUCGACCagcuCGUCCa -3'
miRNA:   3'- gUAGg--GGCUGGAGCUGGacu-GCAGGc -5'
16450 3' -58.2 NC_004084.1 + 5373 0.68 0.49577
Target:  5'- --aUCUCGACgUCGaACCUGGgCGUCCa -3'
miRNA:   3'- guaGGGGCUGgAGC-UGGACU-GCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.