miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16450 3' -58.2 NC_004084.1 + 40312 1.09 0.000699
Target:  5'- aCAUCCCCGACCUCGACCUGACGUCCGa -3'
miRNA:   3'- -GUAGGGGCUGGAGCUGGACUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 6537 0.81 0.067869
Target:  5'- aGUCCCaGAUCUCGACC-GGCGUCCGg -3'
miRNA:   3'- gUAGGGgCUGGAGCUGGaCUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 55607 0.75 0.189489
Target:  5'- -uUCCUCGuuCUCGGCCUcGGCGUCUGg -3'
miRNA:   3'- guAGGGGCugGAGCUGGA-CUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 52690 0.74 0.210028
Target:  5'- uCAUCCCgaucgagGACCUCGGCCcgagcGACGUCCu -3'
miRNA:   3'- -GUAGGGg------CUGGAGCUGGa----CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 56533 0.74 0.215454
Target:  5'- cCAUCCCCGACUU-GGCgUGGCaGUCCa -3'
miRNA:   3'- -GUAGGGGCUGGAgCUGgACUG-CAGGc -5'
16450 3' -58.2 NC_004084.1 + 1667 0.73 0.269843
Target:  5'- -uUCCCCGACgUCGAgUgcuuguggacgaUGAUGUCCGg -3'
miRNA:   3'- guAGGGGCUGgAGCUgG------------ACUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 25975 0.72 0.297365
Target:  5'- -uUCCCCaucGACCUCGACCU--CGUUCGc -3'
miRNA:   3'- guAGGGG---CUGGAGCUGGAcuGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 11390 0.71 0.327017
Target:  5'- -cUCCCCGGCaucgucaUCGAUCgcGACGUCCu -3'
miRNA:   3'- guAGGGGCUGg------AGCUGGa-CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 28302 0.71 0.327017
Target:  5'- -uUCCCCGGCC-CGcuCCccagcGACGUCCGg -3'
miRNA:   3'- guAGGGGCUGGaGCu-GGa----CUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 36152 0.71 0.350657
Target:  5'- --gCCUCGACUggaUCGACgUcGACGUCCGg -3'
miRNA:   3'- guaGGGGCUGG---AGCUGgA-CUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 2820 0.7 0.392689
Target:  5'- gAUCacuaCGACCUCaACCUcGGCGUCCGc -3'
miRNA:   3'- gUAGgg--GCUGGAGcUGGA-CUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 12188 0.69 0.423079
Target:  5'- aCGUCCCCaGCggCGACCUGAUGaugaucgucgacgcaUCCGa -3'
miRNA:   3'- -GUAGGGGcUGgaGCUGGACUGC---------------AGGC- -5'
16450 3' -58.2 NC_004084.1 + 41709 0.69 0.428587
Target:  5'- gCGUCCCgGuCUUCGACCUucaGAuCGUCCc -3'
miRNA:   3'- -GUAGGGgCuGGAGCUGGA---CU-GCAGGc -5'
16450 3' -58.2 NC_004084.1 + 28990 0.69 0.447247
Target:  5'- ----aCCGACgUCGGCCUGAUGaCCGc -3'
miRNA:   3'- guaggGGCUGgAGCUGGACUGCaGGC- -5'
16450 3' -58.2 NC_004084.1 + 16797 0.69 0.456745
Target:  5'- uGUCCCgGACCgUCG-CCUcGCGUUCGu -3'
miRNA:   3'- gUAGGGgCUGG-AGCuGGAcUGCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 10771 0.68 0.46635
Target:  5'- gCGUCgCCGACCUCGACgCcgaagucggUGAgGUUCGu -3'
miRNA:   3'- -GUAGgGGCUGGAGCUG-G---------ACUgCAGGC- -5'
16450 3' -58.2 NC_004084.1 + 30587 0.68 0.46635
Target:  5'- uCGUCCgUGACCUCGcggacGCCgcggucGAUGUCCa -3'
miRNA:   3'- -GUAGGgGCUGGAGC-----UGGa-----CUGCAGGc -5'
16450 3' -58.2 NC_004084.1 + 5373 0.68 0.49577
Target:  5'- --aUCUCGACgUCGaACCUGGgCGUCCa -3'
miRNA:   3'- guaGGGGCUGgAGC-UGGACU-GCAGGc -5'
16450 3' -58.2 NC_004084.1 + 19925 0.68 0.505763
Target:  5'- gAUCaggCCGAUCUCGACCagcuCGUCCa -3'
miRNA:   3'- gUAGg--GGCUGGAGCUGGacu-GCAGGc -5'
16450 3' -58.2 NC_004084.1 + 51717 0.68 0.51483
Target:  5'- aCAUCgCCGGCgUUGACCUcgagaugGACGUCg- -3'
miRNA:   3'- -GUAGgGGCUGgAGCUGGA-------CUGCAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.