Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16450 | 3' | -58.2 | NC_004084.1 | + | 1667 | 0.73 | 0.269843 |
Target: 5'- -uUCCCCGACgUCGAgUgcuuguggacgaUGAUGUCCGg -3' miRNA: 3'- guAGGGGCUGgAGCUgG------------ACUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 2820 | 0.7 | 0.392689 |
Target: 5'- gAUCacuaCGACCUCaACCUcGGCGUCCGc -3' miRNA: 3'- gUAGgg--GCUGGAGcUGGA-CUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 5153 | 0.66 | 0.620003 |
Target: 5'- aCGUCgCCCGGCC-CGAUCUcgucgccgucGACGaCCGc -3' miRNA: 3'- -GUAG-GGGCUGGaGCUGGA----------CUGCaGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 5373 | 0.68 | 0.49577 |
Target: 5'- --aUCUCGACgUCGaACCUGGgCGUCCa -3' miRNA: 3'- guaGGGGCUGgAGC-UGGACU-GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 6537 | 0.81 | 0.067869 |
Target: 5'- aGUCCCaGAUCUCGACC-GGCGUCCGg -3' miRNA: 3'- gUAGGGgCUGGAGCUGGaCUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 7136 | 0.67 | 0.577789 |
Target: 5'- gAUCUCCGugUagguguUCGGCCgggGugGUUCGg -3' miRNA: 3'- gUAGGGGCugG------AGCUGGa--CugCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 8271 | 0.67 | 0.577789 |
Target: 5'- aCAUCCUCGACaaCGACCUcGuCaUCCGg -3' miRNA: 3'- -GUAGGGGCUGgaGCUGGA-CuGcAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 8538 | 0.68 | 0.515842 |
Target: 5'- --aCCgCGACCUCGAgaUcGACGUCCu -3' miRNA: 3'- guaGGgGCUGGAGCUggA-CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 9220 | 0.67 | 0.536234 |
Target: 5'- cCGUCCUggaUGACCugcUCGAUCagGGCGUCCa -3' miRNA: 3'- -GUAGGG---GCUGG---AGCUGGa-CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 10771 | 0.68 | 0.46635 |
Target: 5'- gCGUCgCCGACCUCGACgCcgaagucggUGAgGUUCGu -3' miRNA: 3'- -GUAGgGGCUGGAGCUG-G---------ACUgCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 11390 | 0.71 | 0.327017 |
Target: 5'- -cUCCCCGGCaucgucaUCGAUCgcGACGUCCu -3' miRNA: 3'- guAGGGGCUGg------AGCUGGa-CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 12026 | 0.66 | 0.609414 |
Target: 5'- cCGUCgCCGAUCgucgauUCGACCUGAagggcgucggUGUCCu -3' miRNA: 3'- -GUAGgGGCUGG------AGCUGGACU----------GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 12188 | 0.69 | 0.423079 |
Target: 5'- aCGUCCCCaGCggCGACCUGAUGaugaucgucgacgcaUCCGa -3' miRNA: 3'- -GUAGGGGcUGgaGCUGGACUGC---------------AGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 16797 | 0.69 | 0.456745 |
Target: 5'- uGUCCCgGACCgUCG-CCUcGCGUUCGu -3' miRNA: 3'- gUAGGGgCUGG-AGCuGGAcUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 19925 | 0.68 | 0.505763 |
Target: 5'- gAUCaggCCGAUCUCGACCagcuCGUCCa -3' miRNA: 3'- gUAGg--GGCUGGAGCUGGacu-GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 22517 | 0.66 | 0.620003 |
Target: 5'- uCAUCCUCGacgacgaucGCCUcCGGCCgaaGACGaCCGa -3' miRNA: 3'- -GUAGGGGC---------UGGA-GCUGGa--CUGCaGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 25975 | 0.72 | 0.297365 |
Target: 5'- -uUCCCCaucGACCUCGACCU--CGUUCGc -3' miRNA: 3'- guAGGGG---CUGGAGCUGGAcuGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 27477 | 0.67 | 0.524981 |
Target: 5'- gCGUCCUCGAgCUCGACgUcgacgaggcgaucGACGUCUu -3' miRNA: 3'- -GUAGGGGCUgGAGCUGgA-------------CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 28302 | 0.71 | 0.327017 |
Target: 5'- -uUCCCCGGCC-CGcuCCccagcGACGUCCGg -3' miRNA: 3'- guAGGGGCUGGaGCu-GGa----CUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 28990 | 0.69 | 0.447247 |
Target: 5'- ----aCCGACgUCGGCCUGAUGaCCGc -3' miRNA: 3'- guaggGGCUGgAGCUGGACUGCaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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