Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16450 | 3' | -58.2 | NC_004084.1 | + | 40312 | 1.09 | 0.000699 |
Target: 5'- aCAUCCCCGACCUCGACCUGACGUCCGa -3' miRNA: 3'- -GUAGGGGCUGGAGCUGGACUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 22517 | 0.66 | 0.620003 |
Target: 5'- uCAUCCUCGacgacgaucGCCUcCGGCCgaaGACGaCCGa -3' miRNA: 3'- -GUAGGGGC---------UGGA-GCUGGa--CUGCaGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 12026 | 0.66 | 0.609414 |
Target: 5'- cCGUCgCCGAUCgucgauUCGACCUGAagggcgucggUGUCCu -3' miRNA: 3'- -GUAGgGGCUGG------AGCUGGACU----------GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 31982 | 0.66 | 0.588299 |
Target: 5'- aCGUCCUCGugaUCGACCUGGa-UCCGc -3' miRNA: 3'- -GUAGGGGCuggAGCUGGACUgcAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 8271 | 0.67 | 0.577789 |
Target: 5'- aCAUCCUCGACaaCGACCUcGuCaUCCGg -3' miRNA: 3'- -GUAGGGGCUGgaGCUGGA-CuGcAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 27477 | 0.67 | 0.524981 |
Target: 5'- gCGUCCUCGAgCUCGACgUcgacgaggcgaucGACGUCUu -3' miRNA: 3'- -GUAGGGGCUgGAGCUGgA-------------CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 8538 | 0.68 | 0.515842 |
Target: 5'- --aCCgCGACCUCGAgaUcGACGUCCu -3' miRNA: 3'- guaGGgGCUGGAGCUggA-CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 51717 | 0.68 | 0.51483 |
Target: 5'- aCAUCgCCGGCgUUGACCUcgagaugGACGUCg- -3' miRNA: 3'- -GUAGgGGCUGgAGCUGGA-------CUGCAGgc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 5373 | 0.68 | 0.49577 |
Target: 5'- --aUCUCGACgUCGaACCUGGgCGUCCa -3' miRNA: 3'- guaGGGGCUGgAGC-UGGACU-GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 41709 | 0.69 | 0.428587 |
Target: 5'- gCGUCCCgGuCUUCGACCUucaGAuCGUCCc -3' miRNA: 3'- -GUAGGGgCuGGAGCUGGA---CU-GCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 12188 | 0.69 | 0.423079 |
Target: 5'- aCGUCCCCaGCggCGACCUGAUGaugaucgucgacgcaUCCGa -3' miRNA: 3'- -GUAGGGGcUGgaGCUGGACUGC---------------AGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 2820 | 0.7 | 0.392689 |
Target: 5'- gAUCacuaCGACCUCaACCUcGGCGUCCGc -3' miRNA: 3'- gUAGgg--GCUGGAGcUGGA-CUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 52690 | 0.74 | 0.210028 |
Target: 5'- uCAUCCCgaucgagGACCUCGGCCcgagcGACGUCCu -3' miRNA: 3'- -GUAGGGg------CUGGAGCUGGa----CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 55607 | 0.75 | 0.189489 |
Target: 5'- -uUCCUCGuuCUCGGCCUcGGCGUCUGg -3' miRNA: 3'- guAGGGGCugGAGCUGGA-CUGCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 35993 | 0.67 | 0.545503 |
Target: 5'- uCGUCUCCGACCgcgUCGucggagccgagaaGCgUGAuCGUCCGg -3' miRNA: 3'- -GUAGGGGCUGG---AGC-------------UGgACU-GCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 41277 | 0.67 | 0.56732 |
Target: 5'- uCGUCCCCaucagugaACCgcCGACCUcaucGACGUCCu -3' miRNA: 3'- -GUAGGGGc-------UGGa-GCUGGA----CUGCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 7136 | 0.67 | 0.577789 |
Target: 5'- gAUCUCCGugUagguguUCGGCCgggGugGUUCGg -3' miRNA: 3'- gUAGGGGCugG------AGCUGGa--CugCAGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 57647 | 0.66 | 0.598843 |
Target: 5'- gUcgCCUCGACgagccgaUCGGCCUgGugGUCCa -3' miRNA: 3'- -GuaGGGGCUGg------AGCUGGA-CugCAGGc -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 33051 | 0.66 | 0.609414 |
Target: 5'- uCAagCCCGACCaaGGCCUGAUugaaguUCCGa -3' miRNA: 3'- -GUagGGGCUGGagCUGGACUGc-----AGGC- -5' |
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16450 | 3' | -58.2 | NC_004084.1 | + | 56533 | 0.74 | 0.215454 |
Target: 5'- cCAUCCCCGACUU-GGCgUGGCaGUCCa -3' miRNA: 3'- -GUAGGGGCUGGAgCUGgACUG-CAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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