miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16450 5' -56.4 NC_004084.1 + 26874 0.65 0.675924
Target:  5'- cGGUaGCGCGauguccuccgaggCGAUCGCGGCAUCc-- -3'
miRNA:   3'- -CCGcCGUGUa------------GCUGGCGCCGUAGuuu -5'
16450 5' -56.4 NC_004084.1 + 51672 0.66 0.669387
Target:  5'- cGCGGgACuuacgccgucAUCgGACUcgGCGGCAUCAAAg -3'
miRNA:   3'- cCGCCgUG----------UAG-CUGG--CGCCGUAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 41893 0.66 0.669387
Target:  5'- aGGaGGUccACGaCGACCGCGGCGcgCGAu -3'
miRNA:   3'- -CCgCCG--UGUaGCUGGCGCCGUa-GUUu -5'
16450 5' -56.4 NC_004084.1 + 21775 0.66 0.658467
Target:  5'- cGGCGGCA--UCGACguCGgGGcCGUCAc- -3'
miRNA:   3'- -CCGCCGUguAGCUG--GCgCC-GUAGUuu -5'
16450 5' -56.4 NC_004084.1 + 19078 0.66 0.658467
Target:  5'- cGCGGCcgucuACGUCGAcgucgaucagcaCCGCGGCGg---- -3'
miRNA:   3'- cCGCCG-----UGUAGCU------------GGCGCCGUaguuu -5'
16450 5' -56.4 NC_004084.1 + 19444 0.66 0.655186
Target:  5'- aGGCGGCuuGUCGACUcggugaauguggguGUGGCAg---- -3'
miRNA:   3'- -CCGCCGugUAGCUGG--------------CGCCGUaguuu -5'
16450 5' -56.4 NC_004084.1 + 12959 0.66 0.647522
Target:  5'- aGGCucGGCu--UCGAUCcgcggGCGGCGUCAGAc -3'
miRNA:   3'- -CCG--CCGuguAGCUGG-----CGCCGUAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 31132 0.66 0.647522
Target:  5'- aGCGGCGCcgCGAUCgucaGCGGU-UCGGAc -3'
miRNA:   3'- cCGCCGUGuaGCUGG----CGCCGuAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 28367 0.66 0.636563
Target:  5'- cGGCuGGCACAaCGACgcgaGCGGCccccgCGAGa -3'
miRNA:   3'- -CCG-CCGUGUaGCUGg---CGCCGua---GUUU- -5'
16450 5' -56.4 NC_004084.1 + 52643 0.66 0.629986
Target:  5'- gGGUGaGUGCcUCGGCUGCGGCgagacggagaucgucGUCGAGg -3'
miRNA:   3'- -CCGC-CGUGuAGCUGGCGCCG---------------UAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 52602 0.67 0.614644
Target:  5'- cGGUGGguCgaggcaGUCGACaCGCccGGCGUCGGAu -3'
miRNA:   3'- -CCGCCguG------UAGCUG-GCG--CCGUAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 39257 0.67 0.613549
Target:  5'- gGGCGGCGggaagauggugguCGUCGAUCGCGucGCGgacUCGAu -3'
miRNA:   3'- -CCGCCGU-------------GUAGCUGGCGC--CGU---AGUUu -5'
16450 5' -56.4 NC_004084.1 + 53302 0.67 0.592784
Target:  5'- cGCGaGUACGUUGACC-CGGCgAUCGc- -3'
miRNA:   3'- cCGC-CGUGUAGCUGGcGCCG-UAGUuu -5'
16450 5' -56.4 NC_004084.1 + 47364 0.67 0.571056
Target:  5'- cGGCGGcCGCcccuUCGuCCGCGuCGUCGAc -3'
miRNA:   3'- -CCGCC-GUGu---AGCuGGCGCcGUAGUUu -5'
16450 5' -56.4 NC_004084.1 + 16871 0.68 0.549526
Target:  5'- aGUGGgAUcUCGAgCGCGGCGUCu-- -3'
miRNA:   3'- cCGCCgUGuAGCUgGCGCCGUAGuuu -5'
16450 5' -56.4 NC_004084.1 + 55338 0.68 0.528254
Target:  5'- cGGaacGCACGUCGACgaGCGGCccGUCGAc -3'
miRNA:   3'- -CCgc-CGUGUAGCUGg-CGCCG--UAGUUu -5'
16450 5' -56.4 NC_004084.1 + 14976 0.68 0.52088
Target:  5'- uGGCGGCAggaacaggucgcuCAUCGaguugacgaagaugcGCUGCGGCucGUCGAGc -3'
miRNA:   3'- -CCGCCGU-------------GUAGC---------------UGGCGCCG--UAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 1215 0.68 0.517731
Target:  5'- cGCuGGCugGcUCGGCgGCGGgAUCGAGg -3'
miRNA:   3'- cCG-CCGugU-AGCUGgCGCCgUAGUUU- -5'
16450 5' -56.4 NC_004084.1 + 14649 0.68 0.507294
Target:  5'- cGGCGaGCGCccaGUCGAugcCCGCGaGCGUCc-- -3'
miRNA:   3'- -CCGC-CGUG---UAGCU---GGCGC-CGUAGuuu -5'
16450 5' -56.4 NC_004084.1 + 30342 0.68 0.507294
Target:  5'- cGuCGGCGaggUGGCCGaCGGCGUCGGAu -3'
miRNA:   3'- cC-GCCGUguaGCUGGC-GCCGUAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.