miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16451 5' -55.9 NC_004084.1 + 57249 0.66 0.741146
Target:  5'- -aCCGCGUCGGCgaUGA-CGCGAa-- -3'
miRNA:   3'- caGGUGUAGCCGgaGCUuGCGCUgcu -5'
16451 5' -55.9 NC_004084.1 + 35024 0.66 0.741146
Target:  5'- aGUCUACcaGUCcGuCCUCGAGuggcuCGCGACGGa -3'
miRNA:   3'- -CAGGUG--UAGcC-GGAGCUU-----GCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 12402 0.66 0.741146
Target:  5'- cGUCCugAUCGauguuucggauGCCaaccgcgucUCGAACGCcguGACGAc -3'
miRNA:   3'- -CAGGugUAGC-----------CGG---------AGCUUGCG---CUGCU- -5'
16451 5' -55.9 NC_004084.1 + 35205 0.66 0.741146
Target:  5'- cUCCGaauCGUCGGgaUCGAGC-CGACGAu -3'
miRNA:   3'- cAGGU---GUAGCCggAGCUUGcGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 16582 0.66 0.741146
Target:  5'- -cUCAcCAUCGGCCUCGucacccccuacgGACcCGGCGGg -3'
miRNA:   3'- caGGU-GUAGCCGGAGC------------UUGcGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 55347 0.66 0.738048
Target:  5'- cGUCgACGagCGGCCcgucgacgaguuccUCGAGgGUGGCGAu -3'
miRNA:   3'- -CAGgUGUa-GCCGG--------------AGCUUgCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 38444 0.66 0.730786
Target:  5'- gGUCgGCcccugCGGCCUCGAGgauCGCGA-GAc -3'
miRNA:   3'- -CAGgUGua---GCCGGAGCUU---GCGCUgCU- -5'
16451 5' -55.9 NC_004084.1 + 55540 0.66 0.730786
Target:  5'- cUCCGCgAUCGcGCUggcUGGcCGCGACGAa -3'
miRNA:   3'- cAGGUG-UAGC-CGGa--GCUuGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 51444 0.66 0.730786
Target:  5'- aUCUACGUUGGCga-GGGcCGCGGCGGc -3'
miRNA:   3'- cAGGUGUAGCCGgagCUU-GCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 28943 0.66 0.730786
Target:  5'- -aCCGCcgCacCCUCGAGCGCGucuACGAg -3'
miRNA:   3'- caGGUGuaGccGGAGCUUGCGC---UGCU- -5'
16451 5' -55.9 NC_004084.1 + 32003 0.66 0.730786
Target:  5'- aUCCGCAg-GGCC----ACGCGACGGa -3'
miRNA:   3'- cAGGUGUagCCGGagcuUGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 34469 0.66 0.720331
Target:  5'- cGUCCAUcgCGGUgUCGGACGUa---- -3'
miRNA:   3'- -CAGGUGuaGCCGgAGCUUGCGcugcu -5'
16451 5' -55.9 NC_004084.1 + 1838 0.66 0.720331
Target:  5'- cGUUCACGgugUGGCUccUGcAGCGCGACGGa -3'
miRNA:   3'- -CAGGUGUa--GCCGGa-GC-UUGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 38202 0.66 0.70979
Target:  5'- gGUCCAaaaCGGCCgCGcugucguucGAUGCGGCGAc -3'
miRNA:   3'- -CAGGUguaGCCGGaGC---------UUGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 16389 0.66 0.70979
Target:  5'- -aCgAUGUCGaccGCCUCGcuCGCGACGGc -3'
miRNA:   3'- caGgUGUAGC---CGGAGCuuGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 35587 0.66 0.699176
Target:  5'- cGUUCGCcUCGGCggCUCGAACG-GAuCGAu -3'
miRNA:   3'- -CAGGUGuAGCCG--GAGCUUGCgCU-GCU- -5'
16451 5' -55.9 NC_004084.1 + 26996 0.66 0.699176
Target:  5'- aUCCAUcgCGGCCgcgUCGucUGCGACu- -3'
miRNA:   3'- cAGGUGuaGCCGG---AGCuuGCGCUGcu -5'
16451 5' -55.9 NC_004084.1 + 52627 0.66 0.692776
Target:  5'- -cCgGCGUCGgauaccagggugaguGCCUCGGcUGCGGCGAg -3'
miRNA:   3'- caGgUGUAGC---------------CGGAGCUuGCGCUGCU- -5'
16451 5' -55.9 NC_004084.1 + 22506 0.66 0.688498
Target:  5'- aGUCCACGUcgacgCGGCCacUCcAGCGgGACGu -3'
miRNA:   3'- -CAGGUGUA-----GCCGG--AGcUUGCgCUGCu -5'
16451 5' -55.9 NC_004084.1 + 24272 0.66 0.687428
Target:  5'- -gCUACGUCGGcCCUCGAAauCGagguuguugauucCGACGAu -3'
miRNA:   3'- caGGUGUAGCC-GGAGCUU--GC-------------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.