miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 35978 0.66 0.685562
Target:  5'- cCCCCGAagacggcgguAUUGGCC-UCGuAGAcCGGCc -3'
miRNA:   3'- aGGGGCU----------UGACCGGcAGC-UCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 54354 0.66 0.674895
Target:  5'- aCCaCCGAcauccaGCUGGCgGUCGgcAGAUCacucuGACg -3'
miRNA:   3'- aGG-GGCU------UGACCGgCAGC--UCUAG-----CUG- -5'
16452 5' -56.9 NC_004084.1 + 5343 0.66 0.674895
Target:  5'- gUCgCCGAGCgGGCgG-CGAGGacugggacgaucUCGACg -3'
miRNA:   3'- -AGgGGCUUGaCCGgCaGCUCU------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 2130 0.66 0.674895
Target:  5'- gUCCUCGAAguacacCUGGUgGUCGAcGUCGuACu -3'
miRNA:   3'- -AGGGGCUU------GACCGgCAGCUcUAGC-UG- -5'
16452 5' -56.9 NC_004084.1 + 37859 0.66 0.671687
Target:  5'- -aUUCGAACUGGcCCGucuccucauuccgaUCGGGcAUCGACa -3'
miRNA:   3'- agGGGCUUGACC-GGC--------------AGCUC-UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 56535 0.66 0.66419
Target:  5'- aUCCCCGAcuugGCgUGGCaGUCcagGAGG-CGACg -3'
miRNA:   3'- -AGGGGCU----UG-ACCGgCAG---CUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 19551 0.66 0.653455
Target:  5'- cUUCCCGcaacuCUGGCuCGaCGAGGaCGACg -3'
miRNA:   3'- -AGGGGCuu---GACCG-GCaGCUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 31671 0.66 0.653455
Target:  5'- cUCUCGA--UGGCCGUCGGGAaguUCG-Cu -3'
miRNA:   3'- aGGGGCUugACCGGCAGCUCU---AGCuG- -5'
16452 5' -56.9 NC_004084.1 + 40210 0.66 0.631939
Target:  5'- aCCUCGAGCUGGaCGagGAGAcgCGGa -3'
miRNA:   3'- aGGGGCUUGACCgGCagCUCUa-GCUg -5'
16452 5' -56.9 NC_004084.1 + 33227 0.66 0.631939
Target:  5'- --gCCGAGCgGGCCGUccccuaCGAGuUCGAUg -3'
miRNA:   3'- aggGGCUUGaCCGGCA------GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 9042 0.67 0.621177
Target:  5'- aUCCCgcauCGAGCgGGUagaGUCGGGcgacGUCGACg -3'
miRNA:   3'- -AGGG----GCUUGaCCGg--CAGCUC----UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 21953 0.67 0.621177
Target:  5'- -gUCCGGACgacgucuCCGcCGAGAUCGACa -3'
miRNA:   3'- agGGGCUUGacc----GGCaGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 42015 0.67 0.610424
Target:  5'- -gCUCGAG-UGGCCGUCGcgagcgaggcGGUCGACa -3'
miRNA:   3'- agGGGCUUgACCGGCAGCu---------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 11033 0.67 0.610424
Target:  5'- cCCUgGAGCUcGCCGUCGA---CGACg -3'
miRNA:   3'- aGGGgCUUGAcCGGCAGCUcuaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 52281 0.67 0.610424
Target:  5'- aCCCCGGcGCUGGUCG-CGGaaucGcAUCGACc -3'
miRNA:   3'- aGGGGCU-UGACCGGCaGCU----C-UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 30326 0.67 0.610424
Target:  5'- aCCCCGAACcguUGaCCGUCGGcGAgguggcCGACg -3'
miRNA:   3'- aGGGGCUUG---ACcGGCAGCU-CUa-----GCUG- -5'
16452 5' -56.9 NC_004084.1 + 5676 0.67 0.599688
Target:  5'- gUCCC-AGCggaGGUCGUCGAGGUCcGCu -3'
miRNA:   3'- aGGGGcUUGa--CCGGCAGCUCUAGcUG- -5'
16452 5' -56.9 NC_004084.1 + 52935 0.67 0.599688
Target:  5'- aCUgCGAcgauCUGGCCGUCGGcGUCGuCg -3'
miRNA:   3'- aGGgGCUu---GACCGGCAGCUcUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 20835 0.67 0.599688
Target:  5'- cUCCCCGAGagugcCUcGGCuCGUCGAcgaguuGAUCGGu -3'
miRNA:   3'- -AGGGGCUU-----GA-CCG-GCAGCU------CUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 47638 0.67 0.58898
Target:  5'- aCCUCaccGACUucGG-CGUCGAGGUCGGCg -3'
miRNA:   3'- aGGGGc--UUGA--CCgGCAGCUCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.