miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 40853 1.1 0.000665
Target:  5'- gUCCCCGAACUGGCCGUCGAGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGACCGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43389 0.76 0.176482
Target:  5'- aCCUCGAG-UGGCCGUCGAcGcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAGCU-CuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 28711 0.75 0.206604
Target:  5'- cUCCUCGAAC-GGCCGcgCGGGuUCGGCg -3'
miRNA:   3'- -AGGGGCUUGaCCGGCa-GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 47477 0.75 0.229078
Target:  5'- -aCCgGGACUGGCUGuUCGAGGuguUCGGCg -3'
miRNA:   3'- agGGgCUUGACCGGC-AGCUCU---AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 21072 0.73 0.266624
Target:  5'- gCUUCGAGCUGGgcgUCGUCGGGAUCGcCg -3'
miRNA:   3'- aGGGGCUUGACC---GGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 1006 0.73 0.294324
Target:  5'- aCCUCGAGCUcGCCGgCGAcGUCGACg -3'
miRNA:   3'- aGGGGCUUGAcCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 9982 0.72 0.332033
Target:  5'- gUUCaCCGuACUGGCCGaCGAcGUCGACg -3'
miRNA:   3'- -AGG-GGCuUGACCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 56189 0.72 0.332033
Target:  5'- aUCUCCGcGCUGGCCGaagCGAGcggcgaggacAUCGAUg -3'
miRNA:   3'- -AGGGGCuUGACCGGCa--GCUC----------UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1207 0.71 0.35631
Target:  5'- aUCCUGAacGCUGGCUGgcucggcggCGGGAUCGAg -3'
miRNA:   3'- aGGGGCU--UGACCGGCa--------GCUCUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 13673 0.71 0.35631
Target:  5'- aCCUgGAGCaGGCCGUCGuAGAuggcgUCGAUg -3'
miRNA:   3'- aGGGgCUUGaCCGGCAGC-UCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 51174 0.71 0.364675
Target:  5'- gUCgCCGAGCacgcGCCGaucgUCGAGGUCGGCg -3'
miRNA:   3'- -AGgGGCUUGac--CGGC----AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 5511 0.71 0.373175
Target:  5'- gCCUCGAccuccuGCuUGGCC-UCGAGGUCGAUu -3'
miRNA:   3'- aGGGGCU------UG-ACCGGcAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 27479 0.71 0.390573
Target:  5'- gUCCUCGAGCUcGaCGUCGAcgaggcGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGAcCgGCAGCU------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1967 0.7 0.408493
Target:  5'- aCCgaGAGC-GcGCCGUCGAGAUCGuCg -3'
miRNA:   3'- aGGggCUUGaC-CGGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 3349 0.69 0.455454
Target:  5'- aCCgCCG-AUUGGUCGUCGAcgugcGUCGACg -3'
miRNA:   3'- aGG-GGCuUGACCGGCAGCUc----UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 49633 0.69 0.47504
Target:  5'- gUCgCCGGGCU--CCGUCGAGAuggagUCGGCg -3'
miRNA:   3'- -AGgGGCUUGAccGGCAGCUCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 52474 0.69 0.47504
Target:  5'- aUCgCCUGGAC--GCCGUCGGGAUaGACg -3'
miRNA:   3'- -AG-GGGCUUGacCGGCAGCUCUAgCUG- -5'
16452 5' -56.9 NC_004084.1 + 38480 0.69 0.484989
Target:  5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3'
miRNA:   3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43307 0.69 0.494028
Target:  5'- gCCCUGAG-UGGCUGUCuGGGAaguaacucagcgcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAG-CUCU-------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 12473 0.69 0.495037
Target:  5'- aUCUCUGGACggggaggugUGGCCucagacaUCGGGAUCGACc -3'
miRNA:   3'- -AGGGGCUUG---------ACCGGc------AGCUCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.