miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 39606 0.67 0.58898
Target:  5'- cUCCUGGACgUGGCCGgCGAcGuccUCGACg -3'
miRNA:   3'- aGGGGCUUG-ACCGGCaGCU-Cu--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 6044 0.67 0.58898
Target:  5'- gUCCUCGAGgaGGaCCaa-GAGAUCGAUg -3'
miRNA:   3'- -AGGGGCUUgaCC-GGcagCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 6185 0.67 0.58898
Target:  5'- aCCUCGAGCUcgucucgaucgaGGCuCG-CGAGAcCGACg -3'
miRNA:   3'- aGGGGCUUGA------------CCG-GCaGCUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 8619 0.67 0.584706
Target:  5'- gUCCUCGAGgccgauCUGGCCGUCGAcuccguaaucgCGAUg -3'
miRNA:   3'- -AGGGGCUU------GACCGGCAGCUcua--------GCUG- -5'
16452 5' -56.9 NC_004084.1 + 26461 0.67 0.582571
Target:  5'- gUUCCCGAGCUGGUugagcgcgccggcgaCGUUGAGugugGUCGuCg -3'
miRNA:   3'- -AGGGGCUUGACCG---------------GCAGCUC----UAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 13236 0.68 0.567674
Target:  5'- -gCCCGAucguugccguACUcaccGUCGUCGGGAUCGAUg -3'
miRNA:   3'- agGGGCU----------UGAc---CGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 29355 0.68 0.557093
Target:  5'- cCCCCGAGCgGGCgGUCGcggccugccagcAGAaCGAg -3'
miRNA:   3'- aGGGGCUUGaCCGgCAGC------------UCUaGCUg -5'
16452 5' -56.9 NC_004084.1 + 12905 0.68 0.556038
Target:  5'- gUCCUCGGAgUGGCCGaccggccCGGccagguagacgcuGAUCGACg -3'
miRNA:   3'- -AGGGGCUUgACCGGCa------GCU-------------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 22976 0.68 0.546569
Target:  5'- gCCgaCCGAGucCUGGUCGaccucgcgagCGAGAUCGACg -3'
miRNA:   3'- aGG--GGCUU--GACCGGCa---------GCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 35941 0.68 0.515407
Target:  5'- gUCCCCGGc---GUCGcCGGGGUCGGCg -3'
miRNA:   3'- -AGGGGCUugacCGGCaGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 18419 0.68 0.515407
Target:  5'- cUCCUCGAcgaGCUGGCUGaUGGGAUCu-- -3'
miRNA:   3'- -AGGGGCU---UGACCGGCaGCUCUAGcug -5'
16452 5' -56.9 NC_004084.1 + 12473 0.69 0.495037
Target:  5'- aUCUCUGGACggggaggugUGGCCucagacaUCGGGAUCGACc -3'
miRNA:   3'- -AGGGGCUUG---------ACCGGc------AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43307 0.69 0.494028
Target:  5'- gCCCUGAG-UGGCUGUCuGGGAaguaacucagcgcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAG-CUCU-------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 38480 0.69 0.484989
Target:  5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3'
miRNA:   3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 49633 0.69 0.47504
Target:  5'- gUCgCCGGGCU--CCGUCGAGAuggagUCGGCg -3'
miRNA:   3'- -AGgGGCUUGAccGGCAGCUCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 52474 0.69 0.47504
Target:  5'- aUCgCCUGGAC--GCCGUCGGGAUaGACg -3'
miRNA:   3'- -AG-GGGCUUGacCGGCAGCUCUAgCUG- -5'
16452 5' -56.9 NC_004084.1 + 3349 0.69 0.455454
Target:  5'- aCCgCCG-AUUGGUCGUCGAcgugcGUCGACg -3'
miRNA:   3'- aGG-GGCuUGACCGGCAGCUc----UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1967 0.7 0.408493
Target:  5'- aCCgaGAGC-GcGCCGUCGAGAUCGuCg -3'
miRNA:   3'- aGGggCUUGaC-CGGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 27479 0.71 0.390573
Target:  5'- gUCCUCGAGCUcGaCGUCGAcgaggcGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGAcCgGCAGCU------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 5511 0.71 0.373175
Target:  5'- gCCUCGAccuccuGCuUGGCC-UCGAGGUCGAUu -3'
miRNA:   3'- aGGGGCU------UG-ACCGGcAGCUCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.