miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 51174 0.71 0.364675
Target:  5'- gUCgCCGAGCacgcGCCGaucgUCGAGGUCGGCg -3'
miRNA:   3'- -AGgGGCUUGac--CGGC----AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 13673 0.71 0.35631
Target:  5'- aCCUgGAGCaGGCCGUCGuAGAuggcgUCGAUg -3'
miRNA:   3'- aGGGgCUUGaCCGGCAGC-UCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1207 0.71 0.35631
Target:  5'- aUCCUGAacGCUGGCUGgcucggcggCGGGAUCGAg -3'
miRNA:   3'- aGGGGCU--UGACCGGCa--------GCUCUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 56189 0.72 0.332033
Target:  5'- aUCUCCGcGCUGGCCGaagCGAGcggcgaggacAUCGAUg -3'
miRNA:   3'- -AGGGGCuUGACCGGCa--GCUC----------UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 9982 0.72 0.332033
Target:  5'- gUUCaCCGuACUGGCCGaCGAcGUCGACg -3'
miRNA:   3'- -AGG-GGCuUGACCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1006 0.73 0.294324
Target:  5'- aCCUCGAGCUcGCCGgCGAcGUCGACg -3'
miRNA:   3'- aGGGGCUUGAcCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 21072 0.73 0.266624
Target:  5'- gCUUCGAGCUGGgcgUCGUCGGGAUCGcCg -3'
miRNA:   3'- aGGGGCUUGACC---GGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 47477 0.75 0.229078
Target:  5'- -aCCgGGACUGGCUGuUCGAGGuguUCGGCg -3'
miRNA:   3'- agGGgCUUGACCGGC-AGCUCU---AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 28711 0.75 0.206604
Target:  5'- cUCCUCGAAC-GGCCGcgCGGGuUCGGCg -3'
miRNA:   3'- -AGGGGCUUGaCCGGCa-GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43389 0.76 0.176482
Target:  5'- aCCUCGAG-UGGCCGUCGAcGcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAGCU-CuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 40853 1.1 0.000665
Target:  5'- gUCCCCGAACUGGCCGUCGAGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGACCGGCAGCUCUAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.