miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 1006 0.73 0.294324
Target:  5'- aCCUCGAGCUcGCCGgCGAcGUCGACg -3'
miRNA:   3'- aGGGGCUUGAcCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 1207 0.71 0.35631
Target:  5'- aUCCUGAacGCUGGCUGgcucggcggCGGGAUCGAg -3'
miRNA:   3'- aGGGGCU--UGACCGGCa--------GCUCUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 1967 0.7 0.408493
Target:  5'- aCCgaGAGC-GcGCCGUCGAGAUCGuCg -3'
miRNA:   3'- aGGggCUUGaC-CGGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 2130 0.66 0.674895
Target:  5'- gUCCUCGAAguacacCUGGUgGUCGAcGUCGuACu -3'
miRNA:   3'- -AGGGGCUU------GACCGgCAGCUcUAGC-UG- -5'
16452 5' -56.9 NC_004084.1 + 3349 0.69 0.455454
Target:  5'- aCCgCCG-AUUGGUCGUCGAcgugcGUCGACg -3'
miRNA:   3'- aGG-GGCuUGACCGGCAGCUc----UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 5343 0.66 0.674895
Target:  5'- gUCgCCGAGCgGGCgG-CGAGGacugggacgaucUCGACg -3'
miRNA:   3'- -AGgGGCUUGaCCGgCaGCUCU------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 5511 0.71 0.373175
Target:  5'- gCCUCGAccuccuGCuUGGCC-UCGAGGUCGAUu -3'
miRNA:   3'- aGGGGCU------UG-ACCGGcAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 5676 0.67 0.599688
Target:  5'- gUCCC-AGCggaGGUCGUCGAGGUCcGCu -3'
miRNA:   3'- aGGGGcUUGa--CCGGCAGCUCUAGcUG- -5'
16452 5' -56.9 NC_004084.1 + 6044 0.67 0.58898
Target:  5'- gUCCUCGAGgaGGaCCaa-GAGAUCGAUg -3'
miRNA:   3'- -AGGGGCUUgaCC-GGcagCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 6185 0.67 0.58898
Target:  5'- aCCUCGAGCUcgucucgaucgaGGCuCG-CGAGAcCGACg -3'
miRNA:   3'- aGGGGCUUGA------------CCG-GCaGCUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 8619 0.67 0.584706
Target:  5'- gUCCUCGAGgccgauCUGGCCGUCGAcuccguaaucgCGAUg -3'
miRNA:   3'- -AGGGGCUU------GACCGGCAGCUcua--------GCUG- -5'
16452 5' -56.9 NC_004084.1 + 9042 0.67 0.621177
Target:  5'- aUCCCgcauCGAGCgGGUagaGUCGGGcgacGUCGACg -3'
miRNA:   3'- -AGGG----GCUUGaCCGg--CAGCUC----UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 9982 0.72 0.332033
Target:  5'- gUUCaCCGuACUGGCCGaCGAcGUCGACg -3'
miRNA:   3'- -AGG-GGCuUGACCGGCaGCUcUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 11033 0.67 0.610424
Target:  5'- cCCUgGAGCUcGCCGUCGA---CGACg -3'
miRNA:   3'- aGGGgCUUGAcCGGCAGCUcuaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 12473 0.69 0.495037
Target:  5'- aUCUCUGGACggggaggugUGGCCucagacaUCGGGAUCGACc -3'
miRNA:   3'- -AGGGGCUUG---------ACCGGc------AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 12905 0.68 0.556038
Target:  5'- gUCCUCGGAgUGGCCGaccggccCGGccagguagacgcuGAUCGACg -3'
miRNA:   3'- -AGGGGCUUgACCGGCa------GCU-------------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 13236 0.68 0.567674
Target:  5'- -gCCCGAucguugccguACUcaccGUCGUCGGGAUCGAUg -3'
miRNA:   3'- agGGGCU----------UGAc---CGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 13673 0.71 0.35631
Target:  5'- aCCUgGAGCaGGCCGUCGuAGAuggcgUCGAUg -3'
miRNA:   3'- aGGGgCUUGaCCGGCAGC-UCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 18419 0.68 0.515407
Target:  5'- cUCCUCGAcgaGCUGGCUGaUGGGAUCu-- -3'
miRNA:   3'- -AGGGGCU---UGACCGGCaGCUCUAGcug -5'
16452 5' -56.9 NC_004084.1 + 19551 0.66 0.653455
Target:  5'- cUUCCCGcaacuCUGGCuCGaCGAGGaCGACg -3'
miRNA:   3'- -AGGGGCuu---GACCG-GCaGCUCUaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.