miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 20835 0.67 0.599688
Target:  5'- cUCCCCGAGagugcCUcGGCuCGUCGAcgaguuGAUCGGu -3'
miRNA:   3'- -AGGGGCUU-----GA-CCG-GCAGCU------CUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 21072 0.73 0.266624
Target:  5'- gCUUCGAGCUGGgcgUCGUCGGGAUCGcCg -3'
miRNA:   3'- aGGGGCUUGACC---GGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 21953 0.67 0.621177
Target:  5'- -gUCCGGACgacgucuCCGcCGAGAUCGACa -3'
miRNA:   3'- agGGGCUUGacc----GGCaGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 22976 0.68 0.546569
Target:  5'- gCCgaCCGAGucCUGGUCGaccucgcgagCGAGAUCGACg -3'
miRNA:   3'- aGG--GGCUU--GACCGGCa---------GCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 26461 0.67 0.582571
Target:  5'- gUUCCCGAGCUGGUugagcgcgccggcgaCGUUGAGugugGUCGuCg -3'
miRNA:   3'- -AGGGGCUUGACCG---------------GCAGCUC----UAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 27479 0.71 0.390573
Target:  5'- gUCCUCGAGCUcGaCGUCGAcgaggcGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGAcCgGCAGCU------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 28711 0.75 0.206604
Target:  5'- cUCCUCGAAC-GGCCGcgCGGGuUCGGCg -3'
miRNA:   3'- -AGGGGCUUGaCCGGCa-GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 29355 0.68 0.557093
Target:  5'- cCCCCGAGCgGGCgGUCGcggccugccagcAGAaCGAg -3'
miRNA:   3'- aGGGGCUUGaCCGgCAGC------------UCUaGCUg -5'
16452 5' -56.9 NC_004084.1 + 30326 0.67 0.610424
Target:  5'- aCCCCGAACcguUGaCCGUCGGcGAgguggcCGACg -3'
miRNA:   3'- aGGGGCUUG---ACcGGCAGCU-CUa-----GCUG- -5'
16452 5' -56.9 NC_004084.1 + 31671 0.66 0.653455
Target:  5'- cUCUCGA--UGGCCGUCGGGAaguUCG-Cu -3'
miRNA:   3'- aGGGGCUugACCGGCAGCUCU---AGCuG- -5'
16452 5' -56.9 NC_004084.1 + 33227 0.66 0.631939
Target:  5'- --gCCGAGCgGGCCGUccccuaCGAGuUCGAUg -3'
miRNA:   3'- aggGGCUUGaCCGGCA------GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 35941 0.68 0.515407
Target:  5'- gUCCCCGGc---GUCGcCGGGGUCGGCg -3'
miRNA:   3'- -AGGGGCUugacCGGCaGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 35978 0.66 0.685562
Target:  5'- cCCCCGAagacggcgguAUUGGCC-UCGuAGAcCGGCc -3'
miRNA:   3'- aGGGGCU----------UGACCGGcAGC-UCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 37859 0.66 0.671687
Target:  5'- -aUUCGAACUGGcCCGucuccucauuccgaUCGGGcAUCGACa -3'
miRNA:   3'- agGGGCUUGACC-GGC--------------AGCUC-UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 38480 0.69 0.484989
Target:  5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3'
miRNA:   3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 39606 0.67 0.58898
Target:  5'- cUCCUGGACgUGGCCGgCGAcGuccUCGACg -3'
miRNA:   3'- aGGGGCUUG-ACCGGCaGCU-Cu--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 40210 0.66 0.631939
Target:  5'- aCCUCGAGCUGGaCGagGAGAcgCGGa -3'
miRNA:   3'- aGGGGCUUGACCgGCagCUCUa-GCUg -5'
16452 5' -56.9 NC_004084.1 + 40853 1.1 0.000665
Target:  5'- gUCCCCGAACUGGCCGUCGAGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGACCGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 42015 0.67 0.610424
Target:  5'- -gCUCGAG-UGGCCGUCGcgagcgaggcGGUCGACa -3'
miRNA:   3'- agGGGCUUgACCGGCAGCu---------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43307 0.69 0.494028
Target:  5'- gCCCUGAG-UGGCUGUCuGGGAaguaacucagcgcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAG-CUCU-------------AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.