miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 56535 0.66 0.66419
Target:  5'- aUCCCCGAcuugGCgUGGCaGUCcagGAGG-CGACg -3'
miRNA:   3'- -AGGGGCU----UG-ACCGgCAG---CUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 56189 0.72 0.332033
Target:  5'- aUCUCCGcGCUGGCCGaagCGAGcggcgaggacAUCGAUg -3'
miRNA:   3'- -AGGGGCuUGACCGGCa--GCUC----------UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 54354 0.66 0.674895
Target:  5'- aCCaCCGAcauccaGCUGGCgGUCGgcAGAUCacucuGACg -3'
miRNA:   3'- aGG-GGCU------UGACCGgCAGC--UCUAG-----CUG- -5'
16452 5' -56.9 NC_004084.1 + 52935 0.67 0.599688
Target:  5'- aCUgCGAcgauCUGGCCGUCGGcGUCGuCg -3'
miRNA:   3'- aGGgGCUu---GACCGGCAGCUcUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 52474 0.69 0.47504
Target:  5'- aUCgCCUGGAC--GCCGUCGGGAUaGACg -3'
miRNA:   3'- -AG-GGGCUUGacCGGCAGCUCUAgCUG- -5'
16452 5' -56.9 NC_004084.1 + 52281 0.67 0.610424
Target:  5'- aCCCCGGcGCUGGUCG-CGGaaucGcAUCGACc -3'
miRNA:   3'- aGGGGCU-UGACCGGCaGCU----C-UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 51174 0.71 0.364675
Target:  5'- gUCgCCGAGCacgcGCCGaucgUCGAGGUCGGCg -3'
miRNA:   3'- -AGgGGCUUGac--CGGC----AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 49633 0.69 0.47504
Target:  5'- gUCgCCGGGCU--CCGUCGAGAuggagUCGGCg -3'
miRNA:   3'- -AGgGGCUUGAccGGCAGCUCU-----AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 47638 0.67 0.58898
Target:  5'- aCCUCaccGACUucGG-CGUCGAGGUCGGCg -3'
miRNA:   3'- aGGGGc--UUGA--CCgGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 47477 0.75 0.229078
Target:  5'- -aCCgGGACUGGCUGuUCGAGGuguUCGGCg -3'
miRNA:   3'- agGGgCUUGACCGGC-AGCUCU---AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43389 0.76 0.176482
Target:  5'- aCCUCGAG-UGGCCGUCGAcGcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAGCU-CuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 43307 0.69 0.494028
Target:  5'- gCCCUGAG-UGGCUGUCuGGGAaguaacucagcgcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAG-CUCU-------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 42015 0.67 0.610424
Target:  5'- -gCUCGAG-UGGCCGUCGcgagcgaggcGGUCGACa -3'
miRNA:   3'- agGGGCUUgACCGGCAGCu---------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 40853 1.1 0.000665
Target:  5'- gUCCCCGAACUGGCCGUCGAGAUCGACg -3'
miRNA:   3'- -AGGGGCUUGACCGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 40210 0.66 0.631939
Target:  5'- aCCUCGAGCUGGaCGagGAGAcgCGGa -3'
miRNA:   3'- aGGGGCUUGACCgGCagCUCUa-GCUg -5'
16452 5' -56.9 NC_004084.1 + 39606 0.67 0.58898
Target:  5'- cUCCUGGACgUGGCCGgCGAcGuccUCGACg -3'
miRNA:   3'- aGGGGCUUG-ACCGGCaGCU-Cu--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 38480 0.69 0.484989
Target:  5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3'
miRNA:   3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 37859 0.66 0.671687
Target:  5'- -aUUCGAACUGGcCCGucuccucauuccgaUCGGGcAUCGACa -3'
miRNA:   3'- agGGGCUUGACC-GGC--------------AGCUC-UAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 35978 0.66 0.685562
Target:  5'- cCCCCGAagacggcgguAUUGGCC-UCGuAGAcCGGCc -3'
miRNA:   3'- aGGGGCU----------UGACCGGcAGC-UCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 35941 0.68 0.515407
Target:  5'- gUCCCCGGc---GUCGcCGGGGUCGGCg -3'
miRNA:   3'- -AGGGGCUugacCGGCaGCUCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.