Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16452 | 5' | -56.9 | NC_004084.1 | + | 5343 | 0.66 | 0.674895 |
Target: 5'- gUCgCCGAGCgGGCgG-CGAGGacugggacgaucUCGACg -3' miRNA: 3'- -AGgGGCUUGaCCGgCaGCUCU------------AGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 39606 | 0.67 | 0.58898 |
Target: 5'- cUCCUGGACgUGGCCGgCGAcGuccUCGACg -3' miRNA: 3'- aGGGGCUUG-ACCGGCaGCU-Cu--AGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 47638 | 0.67 | 0.58898 |
Target: 5'- aCCUCaccGACUucGG-CGUCGAGGUCGGCg -3' miRNA: 3'- aGGGGc--UUGA--CCgGCAGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 52281 | 0.67 | 0.610424 |
Target: 5'- aCCCCGGcGCUGGUCG-CGGaaucGcAUCGACc -3' miRNA: 3'- aGGGGCU-UGACCGGCaGCU----C-UAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 21953 | 0.67 | 0.621177 |
Target: 5'- -gUCCGGACgacgucuCCGcCGAGAUCGACa -3' miRNA: 3'- agGGGCUUGacc----GGCaGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 9042 | 0.67 | 0.621177 |
Target: 5'- aUCCCgcauCGAGCgGGUagaGUCGGGcgacGUCGACg -3' miRNA: 3'- -AGGG----GCUUGaCCGg--CAGCUC----UAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 40210 | 0.66 | 0.631939 |
Target: 5'- aCCUCGAGCUGGaCGagGAGAcgCGGa -3' miRNA: 3'- aGGGGCUUGACCgGCagCUCUa-GCUg -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 19551 | 0.66 | 0.653455 |
Target: 5'- cUUCCCGcaacuCUGGCuCGaCGAGGaCGACg -3' miRNA: 3'- -AGGGGCuu---GACCG-GCaGCUCUaGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 37859 | 0.66 | 0.671687 |
Target: 5'- -aUUCGAACUGGcCCGucuccucauuccgaUCGGGcAUCGACa -3' miRNA: 3'- agGGGCUUGACC-GGC--------------AGCUC-UAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 6044 | 0.67 | 0.58898 |
Target: 5'- gUCCUCGAGgaGGaCCaa-GAGAUCGAUg -3' miRNA: 3'- -AGGGGCUUgaCC-GGcagCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 22976 | 0.68 | 0.546569 |
Target: 5'- gCCgaCCGAGucCUGGUCGaccucgcgagCGAGAUCGACg -3' miRNA: 3'- aGG--GGCUU--GACCGGCa---------GCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 38480 | 0.69 | 0.484989 |
Target: 5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3' miRNA: 3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 43389 | 0.76 | 0.176482 |
Target: 5'- aCCUCGAG-UGGCCGUCGAcGcUCGACg -3' miRNA: 3'- aGGGGCUUgACCGGCAGCU-CuAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 28711 | 0.75 | 0.206604 |
Target: 5'- cUCCUCGAAC-GGCCGcgCGGGuUCGGCg -3' miRNA: 3'- -AGGGGCUUGaCCGGCa-GCUCuAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 47477 | 0.75 | 0.229078 |
Target: 5'- -aCCgGGACUGGCUGuUCGAGGuguUCGGCg -3' miRNA: 3'- agGGgCUUGACCGGC-AGCUCU---AGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 9982 | 0.72 | 0.332033 |
Target: 5'- gUUCaCCGuACUGGCCGaCGAcGUCGACg -3' miRNA: 3'- -AGG-GGCuUGACCGGCaGCUcUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 56189 | 0.72 | 0.332033 |
Target: 5'- aUCUCCGcGCUGGCCGaagCGAGcggcgaggacAUCGAUg -3' miRNA: 3'- -AGGGGCuUGACCGGCa--GCUC----------UAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 1207 | 0.71 | 0.35631 |
Target: 5'- aUCCUGAacGCUGGCUGgcucggcggCGGGAUCGAg -3' miRNA: 3'- aGGGGCU--UGACCGGCa--------GCUCUAGCUg -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 51174 | 0.71 | 0.364675 |
Target: 5'- gUCgCCGAGCacgcGCCGaucgUCGAGGUCGGCg -3' miRNA: 3'- -AGgGGCUUGac--CGGC----AGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 27479 | 0.71 | 0.390573 |
Target: 5'- gUCCUCGAGCUcGaCGUCGAcgaggcGAUCGACg -3' miRNA: 3'- -AGGGGCUUGAcCgGCAGCU------CUAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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