Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16452 | 5' | -56.9 | NC_004084.1 | + | 51174 | 0.71 | 0.364675 |
Target: 5'- gUCgCCGAGCacgcGCCGaucgUCGAGGUCGGCg -3' miRNA: 3'- -AGgGGCUUGac--CGGC----AGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 27479 | 0.71 | 0.390573 |
Target: 5'- gUCCUCGAGCUcGaCGUCGAcgaggcGAUCGACg -3' miRNA: 3'- -AGGGGCUUGAcCgGCAGCU------CUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 38480 | 0.69 | 0.484989 |
Target: 5'- aUCCCaaccuggaCGAGCUGGUCGagaucggccugaUCGAGAaaUCGAUg -3' miRNA: 3'- -AGGG--------GCUUGACCGGC------------AGCUCU--AGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 6185 | 0.67 | 0.58898 |
Target: 5'- aCCUCGAGCUcgucucgaucgaGGCuCG-CGAGAcCGACg -3' miRNA: 3'- aGGGGCUUGA------------CCG-GCaGCUCUaGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 8619 | 0.67 | 0.584706 |
Target: 5'- gUCCUCGAGgccgauCUGGCCGUCGAcuccguaaucgCGAUg -3' miRNA: 3'- -AGGGGCUU------GACCGGCAGCUcua--------GCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 26461 | 0.67 | 0.582571 |
Target: 5'- gUUCCCGAGCUGGUugagcgcgccggcgaCGUUGAGugugGUCGuCg -3' miRNA: 3'- -AGGGGCUUGACCG---------------GCAGCUC----UAGCuG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 13236 | 0.68 | 0.567674 |
Target: 5'- -gCCCGAucguugccguACUcaccGUCGUCGGGAUCGAUg -3' miRNA: 3'- agGGGCU----------UGAc---CGGCAGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 29355 | 0.68 | 0.557093 |
Target: 5'- cCCCCGAGCgGGCgGUCGcggccugccagcAGAaCGAg -3' miRNA: 3'- aGGGGCUUGaCCGgCAGC------------UCUaGCUg -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 12905 | 0.68 | 0.556038 |
Target: 5'- gUCCUCGGAgUGGCCGaccggccCGGccagguagacgcuGAUCGACg -3' miRNA: 3'- -AGGGGCUUgACCGGCa------GCU-------------CUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 35941 | 0.68 | 0.515407 |
Target: 5'- gUCCCCGGc---GUCGcCGGGGUCGGCg -3' miRNA: 3'- -AGGGGCUugacCGGCaGCUCUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 52935 | 0.67 | 0.599688 |
Target: 5'- aCUgCGAcgauCUGGCCGUCGGcGUCGuCg -3' miRNA: 3'- aGGgGCUu---GACCGGCAGCUcUAGCuG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 5676 | 0.67 | 0.599688 |
Target: 5'- gUCCC-AGCggaGGUCGUCGAGGUCcGCu -3' miRNA: 3'- aGGGGcUUGa--CCGGCAGCUCUAGcUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 20835 | 0.67 | 0.599688 |
Target: 5'- cUCCCCGAGagugcCUcGGCuCGUCGAcgaguuGAUCGGu -3' miRNA: 3'- -AGGGGCUU-----GA-CCG-GCAGCU------CUAGCUg -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 42015 | 0.67 | 0.610424 |
Target: 5'- -gCUCGAG-UGGCCGUCGcgagcgaggcGGUCGACa -3' miRNA: 3'- agGGGCUUgACCGGCAGCu---------CUAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 11033 | 0.67 | 0.610424 |
Target: 5'- cCCUgGAGCUcGCCGUCGA---CGACg -3' miRNA: 3'- aGGGgCUUGAcCGGCAGCUcuaGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 30326 | 0.67 | 0.610424 |
Target: 5'- aCCCCGAACcguUGaCCGUCGGcGAgguggcCGACg -3' miRNA: 3'- aGGGGCUUG---ACcGGCAGCU-CUa-----GCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 33227 | 0.66 | 0.631939 |
Target: 5'- --gCCGAGCgGGCCGUccccuaCGAGuUCGAUg -3' miRNA: 3'- aggGGCUUGaCCGGCA------GCUCuAGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 31671 | 0.66 | 0.653455 |
Target: 5'- cUCUCGA--UGGCCGUCGGGAaguUCG-Cu -3' miRNA: 3'- aGGGGCUugACCGGCAGCUCU---AGCuG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 56535 | 0.66 | 0.66419 |
Target: 5'- aUCCCCGAcuugGCgUGGCaGUCcagGAGG-CGACg -3' miRNA: 3'- -AGGGGCU----UG-ACCGgCAG---CUCUaGCUG- -5' |
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16452 | 5' | -56.9 | NC_004084.1 | + | 21072 | 0.73 | 0.266624 |
Target: 5'- gCUUCGAGCUGGgcgUCGUCGGGAUCGcCg -3' miRNA: 3'- aGGGGCUUGACC---GGCAGCUCUAGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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